Evidence map›Paper›PMID 27699500›Full record

ArticleAngiogenesis2017

Identification of HIF-2α-regulated genes that play a role in human microvascular endothelial sprouting during prolonged hypoxia in vitro.

Tessa D Nauta, Marloes van den Broek, Sue Gibbs, Tineke C T M van der Pouw-Kraan, Cees B Oudejans, Victor W M van Hinsbergh, Pieter Koolwijk

Open access · hybridAbstract read
In one paragraph

Article in Angiogenesis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 49 citations in OpenAlex.

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  12. Hypoxia Pathway Proteins and Their Impact on the Blood Vasculature.International journal of molecular sciences · 2021
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  17. Frontiers in oncology · 2020
    Review
  18. Article
  19. Primary endothelial cell-specific regulation of hypoxia-inducible factor (HIF)-1 and HIF-2 and their target gene expression profiles during hypoxia.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Tessa D NautaDepartment of Physiology, Institute for Cardiovascular Research, VU University Medical Center, De Boelelaan 1118, Room 11W53, 1081 HV, Amsterdam, The Netherlands.
Marloes van den BroekDepartment of Physiology, Institute for Cardiovascular Research, VU University Medical Center, De Boelelaan 1118, Room 11W53, 1081 HV, Amsterdam, The Netherlands.
Sue GibbsDepartment of Dermatology, VU University Medical Center, Amsterdam, The Netherlands.
Tineke C T M van der Pouw-KraanDepartment of Molecular Cell Biology and Immunology, Institute for Cardiovascular Research, VU University Medical Center, Amsterdam, The Netherlands.
Cees B OudejansDepartment of Clinical Chemistry, VU University Medical Center, Amsterdam, The Netherlands.
Victor W M van HinsberghDepartment of Physiology, Institute for Cardiovascular Research, VU University Medical Center, De Boelelaan 1118, Room 11W53, 1081 HV, Amsterdam, The Netherlands.
Pieter KoolwijkDepartment of Physiology, Institute for Cardiovascular Research, VU University Medical Center, De Boelelaan 1118, Room 11W53, 1081 HV, Amsterdam, The Netherlands. p.koolwijk@vumc.nl.
Amsterdam UMC Location VUmc · NLA-SKIN (Netherlands) · NLAcademic Center for Dentistry Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During prolonged hypoxic conditions, endothelial cells change their gene expression to adjust to the low oxygen environment. This process is mainly regulated by the hypoxia-inducible factors, HIF-1α and HIF-2α. Although endothelial cells do not form sprouts during prolonged hypoxic culturing, silencing of HIF-2α partially restores sprout formation. The present study identifies novel HIF-2α-target genes that may regulate endothelial sprouting during prolonged hypoxia. The gene expression profile of primary human microvascular endothelial cells (hMVECs) that were cultured at 20 % oxygen was compared to hMVECs that were cultured at 1 % oxygen for 14 days by using genome-wide RNA-sequencing. The differentially regulated genes in hypoxia were compared to the genes that were differentially regulated upon silencing of HIF-2α in hypoxia. Surprisingly, KEGG pathway analysis showed that metabolic pathways were enriched within genes upregulated in response to hypoxia and enriched within genes downregulated upon HIF-2α silencing. Moreover, 51 HIF-2α-regulated genes were screened for their role in endothelial sprouting in hypoxia, of which four genes ARRDC3, MME, PPARG and RALGPS2 directly influenced endothelial sprouting during prolonged hypoxic culturing. The manipulation of specific downstream targets of HIF-2α provides a new, but to be further evaluated, perspective for restoring reduced neovascularization in several pathological conditions, such as diabetic ulcers or other chronic wounds, for improvement of vascularization of implanted tissue-engineered scaffolds.

Indexed as

Gene Expression RegulationBasic Helix-Loop-Helix ProteinsCell CycleCell HypoxiaEndothelial CellsEndothelial PAS Domain-Containing Protein 1Gene SilencingHumansMicrovesselsNeovascularization, PhysiologicOxygenRNA, MessengerSignal TransductionTransfectionBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1OxygenRNA, MessengerAngiogenesisGenome-wide RNA-sequencingHIF-2αHypoxia

Identifiers

PMID27699500
PMCPMC5306362
OpenAlexW2528861718

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.