Evidence map›Paper›PMID 27698146›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

A competing hydrophobic tug on L596 to the membrane core unlatches S4-S5 linker elbow from TRP helix and allows TRPV4 channel to open.

Jinfeng Teng, Stephen H Loukin, Andriy Anishkin, Ching Kung

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Natural variation in the binding pocket of a parasitic flatworm TRPM channel resolves the basis for praziquantel sensitivity.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Novel compounds that specifically bind and modulate MscL: insights into channel gating mechanisms.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jinfeng TengLaboratory of Molecular and Cell Biology, University of Wisconsin, Madison, WI 53706; Department of Physiology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Stephen H LoukinLaboratory of Molecular and Cell Biology, University of Wisconsin, Madison, WI 53706.
Andriy AnishkinDepartment of Biology, University of Maryland, College Park, MD 20742.
Ching KungLaboratory of Molecular and Cell Biology, University of Wisconsin, Madison, WI 53706; Department of Genetics, University of Wisconsin, Madison, WI 53706 ckung@wisc.edu.
University of Wisconsin–Madison · USUniversity of Maryland, College Park · US

Funding

TRPV4: Mechanosensitivity and Skeletal DysplasiaR01GM096088 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KUNG, CHING · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM096088
6 · The paper itself

Abstract

We have some generalized physical understanding of how ion channels interact with surrounding lipids but few detailed descriptions on how interactions of particular amino acids with contacting lipids may regulate gating. Here we discovered a structure-specific interaction between an amino acid and inner-leaflet lipid that governs the gating transformations of TRPV4 (transient receptor potential vanilloid type 4). Many cation channels use a S4-S5 linker to transmit stimuli to the gate. At the start of TRPV4's linker helix is leucine 596. A hydrogen bond between the indole of W733 of the TRP helix and the backbone oxygen of L596 secures the helix/linker contact, which acts as a latch maintaining channel closure. The modeled side chain of L596 interacts with the inner lipid leaflet near the polar-nonpolar interface in our model-an interaction that we explored by mutagenesis. We examined the outward currents of TRPV4-expressing Xenopus oocyte upon depolarizations as well as phenotypes of expressing yeast cells. Making this residue less hydrophobic (L596A/G/W/Q/K) reduces open probability [Po; loss-of-function (LOF)], likely due to altered interactions at the polar-nonpolar interface. L596I raises Po [gain-of-function (GOF)], apparently by placing its methyl group further inward and receiving stronger water repulsion. Molecular dynamics simulations showed that the distance between the levels of α-carbons of H-bonded residues L596 and W733 is shortened in the LOFs and lengthened in the GOFs, strengthening or weakening the linker/TRP helix latch, respectively. These results highlight that L596 lipid attraction counteracts the latch bond in a tug-of-war to tune the Po of TRPV4.

Indexed as

Hydrophobic and Hydrophilic InteractionsIon Channel GatingProtein Interaction Domains and MotifsAmino AcidsAmino Acid SequenceAnimalsGain of Function MutationHydrogen BondingLipidsLoss of Function MutationMembranesModels, MolecularPhenotypeProtein ConformationStructure-Activity RelationshipTRPV Cation ChannelsAmino AcidsLipidsTRPV Cation Channelsgatinglipidsopening mechanismTRP channelsTRP domain

Identifiers

PMID27698146
PMCPMC5081603
OpenAlexW2529485338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.