Evidence map›Paper›PMID 27697907›Full record

ArticleDevelopment (Cambridge, England)2016

A network of conserved formins, regulated by the guanine exchange factor EXC-5 and the GTPase CDC-42, modulates tubulogenesis in vivo.

Daniel D Shaye, Iva Greenwald

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Epithelial morphogenesis, tubulogenesis and forces in organogenesis.Current topics in developmental biology · 2021
    Review
  6. The formin INF2 in disease: progress from 10 years of research.Cellular and molecular life sciences : CMLS · 2020
    Review
  7. Article
  8. Article
  9. A Series of Tubes: TheJournal of developmental biology · 2020
    Review
  10. NovelG3 (Bethesda, Md.) · 2019
    Article
  11. Tissue-Specific Functions ofG3 (Bethesda, Md.) · 2018
    Article
  12. Inverted formins: A subfamily of atypical formins.Cytoskeleton (Hoboken, N.J.) · 2017
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Daniel D ShayeDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA shaye@uic.edu.ORCID 0000-0002-3962-6903
Iva GreenwaldDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Columbia University · USUniversity of Illinois Chicago · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Howard Hughes Medical InstituteNIH HHS P40 OD010440
6 · The paper itself

Abstract

The C. elegans excretory cell (EC) is a powerful model for tubulogenesis, a conserved process that requires precise cytoskeletal regulation. EXC-6, an ortholog of the disease-associated formin INF2, coordinates cell outgrowth and lumen formation during EC tubulogenesis by regulating F-actin at the tip of the growing canal and the dynamics of basolateral microtubules. EXC-6 functions in parallel with EXC-5/FGD, a predicted activator of the Rho GTPase Cdc42. Here, we identify the parallel pathway: EXC-5 functions through CDC-42 to regulate two other formins: INFT-2, another INF2 ortholog, and CYK-1, the sole ortholog of the mammalian diaphanous (mDia) family of formins. We show that INFT-2 promotes F-actin accumulation in the EC, and that CYK-1 inhibits INFT-2 to regulate F-actin levels and EXC-6-promoted outgrowth. As INF2 and mDia physically interact and cross-regulate in cultured cells, our work indicates that a conserved EXC-5-CDC-42 pathway modulates this regulatory interaction and that it is functionally important in vivo during tubulogenesis.

Indexed as

Gene Regulatory NetworksActin CytoskeletonAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsCell Cycle ProteinsConserved SequenceEmbryo, NonmammalianFetal ProteinsForminsGene Expression Regulation, DevelopmentalGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsMicrofilament ProteinsMicrotubulesCaenorhabditis elegans Proteinscdc-42 protein, C elegansCell Cycle Proteinsexc-5 protein, C elegansFetal ProteinsForminsGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsMicrofilament ProteinsNuclear ProteinsCdc42C. elegansDiaphanousFGDINF2Tubulogenesis

Identifiers

PMID27697907
PMCPMC5117219
OpenAlexW2529842825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.