Evidence map›Paper›PMID 27697661›Full record

ArticleLeukemia research2016

Possible role of intragenic DNA hypermethylation in gene silencing of the tumor suppressor gene NR4A3 in acute myeloid leukemia.

Ryo Shimizu, Tomoya Muto, Kazumasa Aoyama, Kwangmin Choi, Masahiro Takeuchi, Shuhei Koide, Nagisa Hasegawa, Yusuke Isshiki, Emi Togasaki, Chika Kawajiri-Manako and 12 more

Open access · greenAbstract read
In one paragraph

Article in Leukemia research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Investigation methylation status of tumor suppressor geneMolecular biology research communications · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Journal of dental research · 2021
    Article
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 2 countries.

Ryo ShimizuDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Tomoya MutoDepartment of Hematology, Chiba University Hospital, Chiba, Japan. Electronic address: tomoya.muto@gmail.com.
Kazumasa AoyamaDepartment of Cellular and Molecular Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Kwangmin ChoiDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Masahiro TakeuchiDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Shuhei KoideDepartment of Cellular and Molecular Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Nagisa HasegawaDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yusuke IsshikiDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Emi TogasakiDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Chika Kawajiri-ManakoDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yuhei NagaoDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Shokichi TsukamotoDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Shio SakaiDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Transfusion Medicine and Cell Therapy, Chiba University Hospital, Chiba, Japan.
Yusuke TakedaDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Naoya MimuraDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Transfusion Medicine and Cell Therapy, Chiba University Hospital, Chiba, Japan.
Chikako OhwadaDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Emiko SakaidaDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Tohru IsekiDepartment of Hematology, Chiba University Hospital, Chiba, Japan; Department of Transfusion Medicine and Cell Therapy, Chiba University Hospital, Chiba, Japan.
Daniel T StarczynowskiDivision of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA; Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Atsushi IwamaDepartment of Cellular and Molecular Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Koutaro YokoteDepartment of Clinical Cell Biology and Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Chiaki NakasekoDepartment of Hematology, Chiba University Hospital, Chiba, Japan.
Chiba University Hospital · JPChiba University · JPCincinnati Children's Hospital Medical Center · US

Funding

Identification and characterization of genes in del(5q) myelodysplastic syndromeR01HL111103 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI STARCZYNOWSKI, DANIEL · 2012 to 2016
$1.9M
Role of TRAF6 in Myelodysplastic SyndromesR01HL114582 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI STARCZYNOWSKI, DANIEL · 2014 to 2016
$1.2M
NHLBI NIH HHS R01 HL111103NHLBI NIH HHS R01 HL114582
6 · The paper itself

Abstract

Expression of the tumor suppressor gene NR4A3 is silenced in the blasts of acute myeloid leukemia (AML), irrespective of the karyotype. Although the transcriptional reactivation of NR4A3 is considered to have a broad-spectrum anti-leukemic effect, the therapeutic modalities targeting this gene have been hindered by our minimal understanding of the transcriptional mechanisms regulating its expression, particularly in human AML. Here we show the role of intragenic DNA hypermethylation in reducing the expression of NR4A3 in AML. Bisulfite sequencing analysis revealed that CpG sites at the intragenic region encompassing exon 3 of NR4A3, but not the promoter region, are hypermethylated in AML cell lines and primary AML cells. A DNA methyltransferase inhibitor restored the expression of NR4A3 following a reduction in DNA methylation levels at intragenic CpG sites. The in silico data revealed an enrichment of H3K4me1 and H2A.Z at exon 3 of NR4A3 in human non-malignant cells but that was excluded specifically in leukemia cells with CpG hypermethylation. This suggests that exon 3 represents a functional regulatory element involved in the transcriptional regulation of NR4A3. Our findings improve the current understanding of the mechanism underlying NR4A3 silencing and facilitate the development of NR4A3-targeted therapy.

Indexed as

DNA MethylationGene SilencingAdultAgedAntimetabolites, AntineoplasticAzacitidineBlast CrisisCase-Control StudiesCells, CulturedCpG IslandsDecitabineDNA-Binding ProteinsExonsFemaleGene Expression Regulation, LeukemicGenes, Tumor SuppressorAntimetabolites, AntineoplasticAzacitidineDecitabineDNA-Binding ProteinsNR4A3 protein, humanReceptors, SteroidReceptors, Thyroid HormoneAcute myeloid leukemiaDNA hypermethylationNR4A3Tumor suppressor gene

Identifiers

PMID27697661
PMCPMC5729587
OpenAlexW2524202495

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.