ReviewPlant biotechnology journal2017
Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application.
Review in Plant biotechnology journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 133 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
133 citing papers in PubMed.
- From family trials to genomic mate allocation: statistical and genomic strategies to accelerate sugarcane genetic improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genetic dissection of grain yield and correlated proxy traits under suboptimal conditions.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Article
- Development of InDel-Based Identification Methods for Wild and Domesticated Populations: A Case Study ofAnimals : an open access journal from MDPI · 2026Article
- Genetic diversity and chemotypic variation of Gentiana rhodantha: insights into the genetic basis of active compound accumulation.BMC plant biology · 2026Article
- Integrative linkage mapping and transcriptomic profiling uncover ozone-response modules in a peri-urban forest tree.G3 (Bethesda, Md.) · 2026Article
- Genome-wide association studies reveal a functional SNP and candidate genes associated with alkali tolerance in alfalfa.Plant molecular biology · 2026Article
- Prevalence of nontuberculous mycobacteria isolates and pulmonary disease from respiratory tract samples in persons investigated for presumed tuberculosis from three West African countries, an analysis of three prospective cohort studies.BMC infectious diseases · 2026Article
- Skim-sequencing for genomic selection in wheat: a comparison of marker platforms.The plant genome · 2026Article
- Genome-wide association study bridging genomics-phenomics gap in natural plant populations.Journal of applied genetics · 2026Review
- Adoption of Multi-omics Approaches to Address Drought Stress Tolerance in Rice and Mitigation Strategies for Sustainable Production.Molecular biotechnology · 2026Review
- Reverse BSA-QTLseq: A new genotype-driven bioinformatics approach for simultaneous trait mapping.Plant communications · 2026Article
- GBS-based identification ofFrontiers in plant science · 2026Article
- Genome-wide association studies on body-weight and body-size traits among Zhedong white geese based on a modified genotyping-by-sequencing method.BMC genomics · 2025Article
- Genome-Wide, High-Density Genotyping Approaches for Plant Germplasm Characterisation (Methods and Applications).International journal of molecular sciences · 2025Review
- Genome-wide association study of Ethiopian barley germplasm reveals putative genomic loci underlying root system architectural traits at seedling stage.BMC plant biology · 2025Article
- Deep learning decodes species-specific codon usage signatures in Brassica from coding sequences.Scientific reports · 2025Article
- Integrating Artificial Intelligence and Biotechnology to Enhance Cold Stress Resilience in Legumes.Plants (Basel, Switzerland) · 2025Review
- Resequencing and phenotyping of the first highly inbred eggplant multiparent population revealHorticulture research · 2025Article
- Benchmarking of low coverage sequencing workflows for precision genotyping in eggplant.BMC plant biology · 2025Article
73 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In the last decade, the revolution in sequencing technologies has deeply impacted crop genotyping practice. New methods allowing rapid, high-throughput genotyping of entire crop populations have proliferated and opened the door to wider use of molecular tools in plant breeding. These new genotyping-by-sequencing (GBS) methods include over a dozen reduced-representation sequencing (RRS) approaches and at least four whole-genome resequencing (WGR) approaches. The diversity of methods available, each often producing different types of data at different cost, can make selection of the best-suited method seem a daunting task. We review the most common genotyping methods used today and compare their suitability for linkage mapping, genomewide association studies (GWAS), marker-assisted and genomic selection and genome assembly and improvement in crops with various genome sizes and complexity. Furthermore, we give an outline of bioinformatics tools for analysis of genotyping data. WGR is well suited to genotyping biparental cross populations with complex, small- to moderate-sized genomes and provides the lowest cost per marker data point. RRS approaches differ in their suitability for various tasks, but demonstrate similar costs per marker data point. These approaches are generally better suited for de novo applications and more cost-effective when genotyping populations with large genomes or high heterozygosity. We expect that although RRS approaches will remain the most cost-effective for some time, WGR will become more widespread for crop genotyping as sequencing costs continue to decrease.
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