Evidence map›Paper›PMID 27696579›Full record

ArticleMolecular microbiology2017

The Paracoccus denitrificans NarK-like nitrate and nitrite transporters-probing nitrate uptake and nitrate/nitrite exchange mechanisms.

Alan D Goddard, Shilpa Bali, Despoina A I Mavridou, Victor M Luque-Almagro, Andrew J Gates, M Dolores Roldán, Simon Newstead, David J Richardson, Stuart J Ferguson

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Nitrate reduction salvage pathway inFrontiers in microbiology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Coculture ofMicroorganisms · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. A new family of nitrate/nitrite transporters involved in denitrification.International microbiology : the official journal of the Spanish Society for Microbiology · 2019
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Alan D GoddardSchool of Life Sciences, University of Lincoln, Lincoln, LN6 7TS, UK.
Shilpa BaliDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Despoina A I MavridouDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Victor M Luque-AlmagroCentre for Molecular and Structural Biochemistry, School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Andrew J GatesCentre for Molecular and Structural Biochemistry, School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
M Dolores RoldánDepartamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Edificio Severo Ochoa, 1a planta, Campus de Rabanales, Córdoba, 14071, Spain.
Simon NewsteadDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
David J RichardsonCentre for Molecular and Structural Biochemistry, School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Stuart J FergusonDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
University of Oxford · GBUniversity of Córdoba · ESUniversity of East Anglia · GBAston University · GBImperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D523019/1Biotechnology and Biological Sciences Research Council BB/E021999/1Medical Research Council MR/J006874/1Medical Research Council MR/M009505/1Wellcome TrustWellcome Trust 102890/Z/13/Z
6 · The paper itself

Abstract

Nitrate and nitrite transport across biological membranes is often facilitated by protein transporters that are members of the major facilitator superfamily. Paracoccus denitrificans contains an unusual arrangement whereby two of these transporters, NarK1 and NarK2, are fused into a single protein, NarK, which delivers nitrate to the respiratory nitrate reductase and transfers the product, nitrite, to the periplasm. Our complementation studies, using a mutant lacking the nitrate/proton symporter NasA from the assimilatory nitrate reductase pathway, support that NarK1 functions as a nitrate/proton symporter while NarK2 is a nitrate/nitrite antiporter. Through the same experimental system, we find that Escherichia coli NarK and NarU can complement deletions in both narK and nasA in P. denitrificans, suggesting that, while these proteins are most likely nitrate/nitrite antiporters, they can also act in the net uptake of nitrate. Finally, we argue that primary sequence analysis and structural modelling do not readily explain why NasA, NarK1 and NarK2, as well as other transporters from this protein family, have such different functions, ranging from net nitrate uptake to nitrate/nitrite exchange.

Indexed as

Anion Transport ProteinsBacterial ProteinsBiological TransportEscherichia coliGenetic Complementation TestIon TransportNitrate ReductaseNitratesNitrate TransportersNitrite ReductasesNitritesParacoccus denitrificansAnion Transport ProteinsBacterial ProteinsNitrate ReductaseNitratesNitrate TransportersNitrite ReductasesNitrites

Identifiers

PMID27696579
PMCPMC5217062
OpenAlexW2528363991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.