Evidence map›Paper›PMID 27695442›Full record

ArticleFrontiers in microbiology2016

Applicability of an in-House Saponin-Based Extraction Method in Bruker Biotyper Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry System for Identification of Bacterial and Fungal Species in Positively Flagged Blood Cultures.

Jung-Yien Chien, Tai-Fen Lee, Shin-Hei Du, Shih-Hua Teng, Chun-Hsing Liao, Wang-Hui Sheng, Lee-Jene Teng, Po-Ren Hsueh

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jung-Yien ChienGraduate Institute of Clinical Medicine, College of Medicine, National Taiwan UniversityTaipei, Taiwan; Departments of Internal Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan UniversityTaipei, Taiwan.
Tai-Fen LeeDepartments of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan UniversityTaipei, Taiwan; Departments of Graduate Institute of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan UniversityTaipei, Taiwan.
Shin-Hei DuDepartments of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan University Taipei, Taiwan.
Shih-Hua TengDepartment of Graduate Institute of Biomedical Sciences, Chang Gung UniversityTao-Yuan, Taiwan; Bruker Taiwan Co., Ltd.Taipei, Taiwan.
Chun-Hsing LiaoDepartment of Internal Medicine, Far Eastern Memorial Hospital Taipei, Taiwan.
Wang-Hui ShengDepartments of Internal Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan University Taipei, Taiwan.
Lee-Jene TengDepartments of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan UniversityTaipei, Taiwan; Departments of Graduate Institute of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan UniversityTaipei, Taiwan.
Po-Ren HsuehDepartments of Internal Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan UniversityTaipei, Taiwan; Departments of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan UniversityTaipei, Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We used an in-house saponin-based extraction method to evaluate the performance of the Bruker Biotyper matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF/MS) system for the identification of bacteria and fungi in 405 positively flagged blood culture bottles. Results obtained from MALDI-TOF/MS were compared with those obtained using conventional phenotypic identification methods. Of the 405 positively flagged blood culture bottles, 365 showed monomicrobal growth and were correctly identified to the species (72.1%) or genus (89.6%) level using the Bruker Biotyper system. The remaining 40 positively flagged blood culture bottles showed polymicrobial growth. Of them, 82.5% (

Indexed as

Bruker Biotyper systemflagged blood culturesMALDI-TOF MSperformanceVitek MS system

Identifiers

PMID27695442
PMCPMC5024563

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.