Evidence map›Paper›PMID 27694799›Full record

ArticleNature chemical biology2016

Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution.

Sibel Kalyoncu, David P Heaner, Zohre Kurt, Casey M Bethel, Chiamaka U Ukachukwu, Srinivas Chakravarthy, Jim C Spain, Raquel L Lieberman

Abstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Adaptations of the GenusCurrent issues in molecular biology · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sibel Kalyoncu *School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA.
David P Heaner *School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA.
Zohre KurtSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA.
Casey M BethelSchool of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA.
Chiamaka U UkachukwuSchool of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA.
Srinivas ChakravarthyBiophysics Collaborative Access Team, Advanced Photon Source, Argonne National Labs, Lemont, IL.
Jim C SpainSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA.
Raquel L Lieberman *School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA.

Funding

Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
NIGMS NIH HHS P41 GM103622NIH HHS S10 OD018090
6 · The paper itself

Abstract

Nitroaromatic compounds are typically toxic and resistant to degradation. Bradyrhizobium species strain JS329 metabolizes 5-nitroanthranilic acid (5NAA), which is a molecule secreted by Streptomyces scabies, the plant pathogen responsible for potato scab. The first biodegradation enzyme is 5NAA-aminohydrolase (5NAA-A), a metalloprotease family member that converts 5NAA to 5-nitrosalicylic acid. We characterized 5NAA-A biochemically and obtained snapshots of its mechanism. 5NAA-A, an octamer that can use several divalent transition metals for catalysis in vitro, employs a nucleophilic aromatic substitution mechanism. Unexpectedly, the metal in 5NAA-A is labile but is readily loaded in the presence of substrate. 5NAA-A is specific for 5NAA and cannot hydrolyze other tested derivatives, which are likewise poor inhibitors. The 5NAA-A structure and mechanism expand our understanding of the chemical ecology of an agriculturally important plant and pathogen, and will inform bioremediation and biocatalytic approaches to mitigate the environmental and ecological impact of nitroanilines and other challenging substrates.

Indexed as

AminohydrolasesBarbituratesCatalysisHydrolysisModels, MolecularMolecular StructureNitro CompoundsOrganometallic CompoundsSalicylatesTransition Elements5-nitrobarbituric acidAminohydrolasesBarbituratesNitro CompoundsOrganometallic CompoundsSalicylatesTransition Elements

Identifiers

PMID27694799
PMCPMC5110390

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.