Evidence map›Paper›PMID 27694446›Full record

ArticleThe Journal of biological chemistry2016

Crystal Structures of the Nuclear Receptor, Liver Receptor Homolog 1, Bound to Synthetic Agonists.

Suzanne G Mays, C Denise Okafor, Richard J Whitby, Devrishi Goswami, Józef Stec, Autumn R Flynn, Michael C Dugan, Nathan T Jui, Patrick R Griffin, Eric A Ortlund

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

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  11. Nuclear receptor NR5A2 negatively regulates cell proliferation and tumor growth in nervous system malignancies.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Suzanne G MaysFrom the Department of Biochemistry, Emory University School of Medicine, and.
C Denise OkaforFrom the Department of Biochemistry, Emory University School of Medicine, and.
Richard J Whitbythe School of Chemistry, University of Southampton, Southampton, Hants SO17 1BJ, United Kingdom, and.
Devrishi Goswamithe Scripps Research Institute, Jupiter, Florida 33458.
Józef Stecthe School of Chemistry, University of Southampton, Southampton, Hants SO17 1BJ, United Kingdom, and.
Autumn R Flynnthe Department of Chemistry, Emory University, Atlanta, Georgia 30322.
Michael C Duganthe Department of Chemistry, Emory University, Atlanta, Georgia 30322.
Nathan T Juithe Department of Chemistry, Emory University, Atlanta, Georgia 30322.
Patrick R Griffinthe Scripps Research Institute, Jupiter, Florida 33458.
Eric A OrtlundFrom the Department of Biochemistry, Emory University School of Medicine, and eortlun@emory.edu.
Emory University · USScripps Research Institute · USUniversity of Southampton · GB

Funding

IRACDA Fellowships in Research and Science Training (FIRST)K12GM000680 · NIGMS · EMORY UNIVERSITY · PI BROWN, LOU ANN S, MCCARTY, NAEL A · 2000 to 2024
$41.2M
Graduate Training in the Pharmacological StudiesT32GM008602 · NIGMS · EMORY UNIVERSITY · PI HALL, RANDY A. · 1996 to 2021
$5.1M
Targeting the orphan nuclear receptor LRH-1 with small moleculesR01DK115213 · NIDDK · EMORY UNIVERSITY · PI John Winter Calvert, Eric A Ortlund · 2017 to 2026
$4.6M
Targeting LRH-1 - Phospholipid Signaling in Metabolic PathwaysR01DK095750 · NIDDK · EMORY UNIVERSITY · PI ORTLUND, ERIC A · 2012 to 2016
$1.7M
Regulation of LRH-1 by small moleculesF31DK111171 · NIDDK · EMORY UNIVERSITY · PI MAYS, SUZANNE GILCHRIST · 2016 to 2018
$116k
NIDDK NIH HHS F31 DK111171NIDDK NIH HHS R01 DK095750NIDDK NIH HHS R01 DK115213NIGMS NIH HHS K12 GM000680NIGMS NIH HHS T32 GM008602
6 · The paper itself

Abstract

Liver receptor homolog 1 (NR5A2, LRH-1) is an orphan nuclear hormone receptor that regulates diverse biological processes, including metabolism, proliferation, and the resolution of endoplasmic reticulum stress. Although preclinical and cellular studies demonstrate that LRH-1 has great potential as a therapeutic target for metabolic diseases and cancer, development of LRH-1 modulators has been difficult. Recently, systematic modifications to one of the few known chemical scaffolds capable of activating LRH-1 failed to improve efficacy substantially. Moreover, mechanisms through which LRH-1 is activated by synthetic ligands are entirely unknown. Here, we use x-ray crystallography and other structural methods to explore conformational changes and receptor-ligand interactions associated with LRH-1 activation by a set of related agonists. Unlike phospholipid LRH-1 ligands, these agonists bind deep in the pocket and do not interact with residues near the mouth nor do they expand the pocket like phospholipids. Unexpectedly, two closely related agonists with similar efficacies (GSK8470 and RJW100) exhibit completely different binding modes. The dramatic repositioning is influenced by a differential ability to establish stable face-to-face π-π-stacking with the LRH-1 residue His-390, as well as by a novel polar interaction mediated by the RJW100 hydroxyl group. The differing binding modes result in distinct mechanisms of action for the two agonists. Finally, we identify a network of conserved water molecules near the ligand-binding site that are important for activation by both agonists. This work reveals a previously unappreciated complexity associated with LRH-1 agonist development and offers insights into rational design strategies.

Indexed as

Aniline CompoundsBridged Bicyclo CompoundsCrystallography, X-RayHumansProtein DomainsReceptors, Cytoplasmic and NuclearAniline CompoundsBridged Bicyclo CompoundsGSK 8470NR5A2 protein, humanReceptors, Cytoplasmic and Nuclearallosteric regulationdiabeteslipidsmolecular dynamicsnuclear receptorphosphatidylcholine

Identifiers

PMID27694446
PMCPMC5207232
OpenAlexW2557326422

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.