Evidence map›Paper›PMID 27694206›Full record

ArticleDatabase : the journal of biological databases and curation2016

The Global Genome Biodiversity Network (GGBN) Data Standard specification.

G Droege, K Barker, O Seberg, J Coddington, E Benson, W G Berendsohn, B Bunk, C Butler, E M Cawsey, J Deck and 25 more

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
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  12. Green plant genomes: What we know in an era of rapidly expanding opportunities.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  16. NCBI Taxonomy: a comprehensive update on curation, resources and tools.Database : the journal of biological databases and curation · 2020
    Review
  17. CNSA: a data repository for archiving omics data.Database : the journal of biological databases and curation · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 18 institutions in 7 countries.

G DroegeBotanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, Berlin 14195, Germany g.droege@bgbm.org.
K BarkerNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
O SebergNatural History Museum of Denmark, University of Copenhagen, Sølvgade 83, opg. S, Copenhagen DK-1307, Denmark.
J CoddingtonNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
E BensonDamar Research Scientists, Damar, Drum Road, Cuparmuir, Fife KY15 5RJ, UK.
W G BerendsohnBotanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, Berlin 14195, Germany.
B BunkLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstr. 7B, Braunschweig 38124, Germany.
C ButlerNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
E M CawseyAustralian National Wildlife Collection, CSIRO National Research Collections Australia, Canberra, Australia.
J DeckBerkeley Natural History Museums, University of California at Berkeley, Berkeley, CA 94720, USA.
M DöringGlobal Biodiversity Information Facility Secretariat, Universitetsparken 15, Copenhagen DK-2100, Denmark.
P FlemonsAustralian Museum, Sydney 2010, NSW, Australia.
B GemeinholzerSystematic Botany, Justus Liebig University, Giessen 35392, Germany.
A GüntschBotanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, Berlin 14195, Germany.
T HollowellNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
P KelbertBotanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, Berlin 14195, Germany.
I KostadinovDepartment of Life Sciences & Chemistry, Jacobs University Bremen gGmbH, Campus Ring 1, Bremen 28759, Germany.
R KottmannMicrobial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, Bremen 28359, Germany.
R T LawlorARC-Net Applied Research on Cancer Centre, Department of Pathology and Diagnostics, University of Verona, Verona 37134, Italy.
C LyalNatural History Museum, Cromwell Road, London SW7 5BD, UK.
J Mackenzie-DoddsNatural History Museum, Cromwell Road, London SW7 5BD, UK.
C MeyerNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
D MulcahyNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
S Y NussbeckDepartment of Medical Informatics and UMG Biobank, University Medical Center Göttingen, Robert-Koch-Str. 40, Göttingen 37075, Germany.
É O'TuamaGlobal Biodiversity Information Facility Secretariat, Universitetsparken 15, Copenhagen DK-2100, Denmark.
T OrrellNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
G PetersenNatural History Museum of Denmark, University of Copenhagen, Sølvgade 83, opg. S, Copenhagen DK-1307, Denmark.
T RobertsonGlobal Biodiversity Information Facility Secretariat, Universitetsparken 15, Copenhagen DK-2100, Denmark.
C SöhngenLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstr. 7B, Braunschweig 38124, Germany.
J WhitacreNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.
J WieczorekMuseum of Vertebrate Zoology, University of California at Berkeley, Berkeley, CA 94720, USA.
P YilmazMicrobial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, Bremen 28359, Germany.
H ZetzscheJulius Kuehn-Institute (JKI), Federal Research Centre for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Erwin-Baur-Str. 27, Quedlinburg 06484, Germany.
Y ZhangChina National GeneBank, BGI-Shenzhen, Shenzhen, Guangdong 518083, China.
X ZhouChina National GeneBank, BGI-Shenzhen, Shenzhen, Guangdong 518083, China.
National Museum of Natural History · USSmithsonian Institution · USBotanic Garden and Botanical Museum Berlin · DEGlobal Biodiversity Information Facility · DKChina National GeneBank · CNLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEMax Planck Institute for Marine Microbiology · DENatural History Museum · GBNatural History Museum Aarhus · DKAustralian Museum · AUAustralian National Wildlife Collection · AUConstructor University · DEFreie Universität Berlin · DEJulius Kühn-Institut · DEMuseum of Vertebrate Zoology · USUniversitätsmedizin Göttingen · DEUniversity of Giessen · DEUniversity of Verona · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard.

Indexed as

BiodiversityDatabases, Nucleic AcidGenome

Identifiers

PMID27694206
PMCPMC5045859
OpenAlexW2528816092

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.