Evidence map›Paper›PMID 27693919›Full record

ArticleVirus research2017

Differential response of cassava genotypes to infection by cassava mosaic geminiviruses.

Paul Kuria, Muhammad Ilyas, Elijah Ateka, Douglas Miano, Justus Onguso, James C Carrington, Nigel J Taylor

Open access · hybridAbstract read
In one paragraph

Article in Virus research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Investigating Grapevine Red Blotch Virus Infection inInternational journal of molecular sciences · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Geminivirus Resistance: A Minireview.Frontiers in plant science · 2020
    Review
  9. RNA silencing ofBiotechnology reports (Amsterdam, Netherlands) · 2019
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Paul KuriaJomo Kenyatta University of Agriculture and Technology, PO Box 62000-00200 Nairobi, Kenya; Kenya Agricultural and Livestock Research Organization, PO Box 57811-00200, Nairobi, Kenya.
Muhammad IlyasDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Elijah AtekaJomo Kenyatta University of Agriculture and Technology, PO Box 62000-00200 Nairobi, Kenya.
Douglas MianoUniversity of Nairobi, PO BOX 30197, 00100, Nairobi, Kenya.
Justus OngusoJomo Kenyatta University of Agriculture and Technology, PO Box 62000-00200 Nairobi, Kenya.
James C CarringtonDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA.
Nigel J TaylorDonald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO, 63132, USA. Electronic address: ntaylor@danforthcenter.org.
Donald Danforth Plant Science Center · USJomo Kenyatta University of Agriculture and Technology · KEUniversity of Nairobi · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitigation of cassava mosaic disease (CMD) focuses on the introgression of resistance imparted by the polygenic recessive (CMD1), dominant monogenic (CMD2) and CMD3 loci. The mechanism(s) of resistance they impart, however, remain unknown. Two CMD susceptible and nine CMD resistant cassava genotypes were inoculated by microparticle bombardment with infectious clones of African cassava mosaic virus Cameroon strain (ACMV-CM) and the Kenyan strain K201 of East African cassava mosaic virus (EACMV KE2 [K201]). Genotypes carrying the CMD1 (TMS 30572), CMD2 (TME 3, TME 204 and Oko-iyawo) and CMD3 (TMS 97/0505) resistance mechanisms showed high levels of resistance to ACMV-CM, with viral DNA undetectable by PCR beyond 7days post inoculation (dpi). In contrast, all genotypes initially developed severe CMD symptoms and accumulated high virus titers after inoculation with EACMV KE2 (K201). Resistant genotypes recovered to become asymptomatic by 65dpi with no detectable virus in newly formed leaves. Genotype TMS 97/2205 showed highest resistance to EACMV KE2 (K201) with <30% of inoculated plants developing symptoms followed by complete recovery by 35dpi. Deep sequencing of small RNAs confirmed production of 21-24 nt virus derived small RNAs (vsRNA) that mapped to cover the entire ACMV-CM and EACMV KE2 (K201) viral genomes in both polarities, with hotspots seen within gene coding regions. In resistant genotypes, total vsRNAs were most abundant at 20 and 35dpi but reduced significantly upon recovery from CMD. In contrast, CMD susceptible genotypes displayed abundant vsRNAs throughout the experimental period. The percentage of vsRNAs reads ranked by class size were 21nt (45%), 22 nt (28%) and 24 nt (18%) in all genotypes studied. The number of vsRNA reads directly correlated with virus titer and CMD symptoms.

Indexed as

GenotypeHost-Pathogen InteractionsBegomovirusDNA, ViralGenome, ViralHigh-Throughput Nucleotide SequencingManihotPhenotypePhylogenyPlant DiseasesRNA, Small UntranslatedRNA, ViralDNA, ViralRNA, Small UntranslatedRNA, ViralAfrican cassava mosaic virusCassava mosaic diseaseCMD1CMD2CMD3East african cassava mosaic virus

Identifiers

PMID27693919
PMCPMC5130204
OpenAlexW2525306463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.