Evidence map›Paper›PMID 27693690›Full record

ArticleActa biomaterialia2016

Targeted proteomics effectively quantifies differences between native lung and detergent-decellularized lung extracellular matrices.

Elizabeth A Calle, Ryan C Hill, Katherine L Leiby, Andrew V Le, Ashley L Gard, Joseph A Madri, Kirk C Hansen, Laura E Niklason

Open access · greenAbstract read
In one paragraph

Article in Acta biomaterialia, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Epithelial Reprogramming and Transition during Pulmonary Bioengineering.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
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  5. Article
  6. Review
  7. Review
  8. Application of decellularized tissue for soft-hard interregional regeneration.Frontiers in bioengineering and biotechnology · 2025
    Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Rational engineering of lung alveolar epithelium.NPJ Regenerative medicine · 2023
    Article
  14. Article
  15. Article
  16. Clinical Translation of Engineered Pulmonary Vascular Models.Advances in experimental medicine and biology · 2023
    Article
  17. Lung Tissue Engineering: Toward a More Deliberate Approach.ACS biomaterials science & engineering · 2022
    Review
  18. Emerging Paradigms in Bioengineering the Lungs.Bioengineering (Basel, Switzerland) · 2022
    Review
  19. Engineered Lung Tissues Prepared from Decellularized Lung Slices.Journal of visualized experiments : JoVE · 2022
    Article
  20. Novel Decellularization Method for Tissue Slices.Frontiers in bioengineering and biotechnology · 2022
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Elizabeth A CalleDepartment of Biomedical Engineering, Yale University, New Haven, CT 06519, USA; Yale School of Medicine, Yale University, New Haven, CT 06519, USA. Electronic address: elizabeth.calle@yale.edu.
Ryan C HillDepartment of Biochemistry and Molecular Genetics, University of Colorado, Denver, Aurora, CO 80045, USA. Electronic address: ryan.hill@ucdenver.edu.
Katherine L LeibyDepartment of Biomedical Engineering, Yale University, New Haven, CT 06519, USA; Yale School of Medicine, Yale University, New Haven, CT 06519, USA. Electronic address: katherine.leiby@yale.edu.
Andrew V LeDepartment of Surgery, Yale University, New Haven, CT 06519, USA. Electronic address: andrew.le@yale.edu.
Ashley L GardDepartment of Biomedical Engineering, Yale University, New Haven, CT 06519, USA. Electronic address: ashley.gard@yale.edu.
Joseph A MadriDepartment of Pathology, Yale University, New Haven, CT 06519, USA. Electronic address: joseph.madri@yale.edu.
Kirk C HansenDepartment of Biochemistry and Molecular Genetics, University of Colorado, Denver, Aurora, CO 80045, USA. Electronic address: kirk.hansen@ucdenver.edu.
Laura E NiklasonDepartment of Biomedical Engineering, Yale University, New Haven, CT 06519, USA; Department of Anesthesiology, Yale University, New Haven, CT 06519, USA. Electronic address: laura.niklason@yale.edu.
Yale University · USUniversity of Colorado Denver · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Research Training in AnesthesiaT32GM086287 · NIGMS · YALE UNIVERSITY · PI ROBERT SCHONBERGER · 2009 to 2026
$3.7M
Matrix and Bioreactors for Human Lung RegenerationU01HL111016 · NHLBI · YALE UNIVERSITY · PI NIKLASON, LAURA E, WHITE, ERIC S · 2012 to 2016
$3.2M
NHLBI NIH HHS U01 HL111016NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM086287
6 · The paper itself

Abstract

Extracellular matrix is a key component of many products in regenerative medicine. Multiple regenerative medicine products currently in the clinic are comprised of human or xenogeneic extracellular matrix. In addition, whole-organ regeneration exploits decellularized native organs as scaffolds for organotypic cell culture. However, precise understanding of the constituents of such extracellular matrix-based implants and scaffolds has sorely lagged behind their use. We present here an advanced protein extraction method using known quantities of proteotypic STATEMENT OF SIGNIFICANCE: The extracellular matrix (ECM) in large part defines the biochemical and mechanical properties of tissues and organs; these inherent cues make acellular ECM scaffolds potent substrates for tissue regeneration. As such, they are increasingly prevalent in the clinic and the laboratory. However, the exact composition of these scaffolds has been difficult to ascertain. This paper uses targeted proteomics to definitively quantify 71 proteins present in acellular lung ECM scaffolds. We use this technique to compare two decellularization methods and demonstrate superior retention of ECM proteins important for cell adhesion, migration, proliferation, and differentiation in scaffolds treated with low-concentration detergent solutions. In the long term, the ability to acquire quantitative biochemical data about biological substrates will facilitate the rational design of engineered tissues and organs based on precise cell-matrix interactions.

Indexed as

AnimalsBasement MembraneCell Adhesion MoleculesDetergentsExtracellular MatrixExtracellular Matrix ProteinsLungMaleProteoglycansProteomicsRats, Inbred F344Tissue ScaffoldsCell Adhesion MoleculesDetergentsExtracellular Matrix ProteinsProteoglycansDecellularizationExtracellular matrixQuantitative proteomicsRegenerative medicineTissue engineering

Identifiers

PMID27693690
PMCPMC5451113
OpenAlexW2526753253

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.