Evidence map›Paper›PMID 27692071›Full record

ArticleeLife2016

Evidence for evolutionary divergence of activity-dependent gene expression in developing neurons.

Jing Qiu, Jamie McQueen, Bilada Bilican, Owen Dando, Dario Magnani, Karolina Punovuori, Bhuvaneish T Selvaraj, Matthew Livesey, Ghazal Haghi, Samuel Heron and 12 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Synaptic plasticity in human thalamocortical assembloids.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Neuronal Activity and Its Role in Controlling Antioxidant Genes.International journal of molecular sciences · 2020
    Review
  17. Type 1 Interleukin-4 Signaling Obliterates Mouse AstrogliaFrontiers in cell and developmental biology · 2020
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Jing QiuSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Jamie McQueenSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Bilada BilicanMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Owen DandoSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Dario MagnaniMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Karolina PunovuoriMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-0297-1225
Bhuvaneish T SelvarajMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Matthew LiveseySchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Ghazal HaghiSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Samuel HeronSchool of Informatics, University of Edinburgh, Edinburgh, United Kingdom.
Karen BurrMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Rickie PataniMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Rinku RajanSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
Olivia SheppardDepartment of Neurodegenerative Disease, UCL Institute of Neurology, London, United Kingdom.
Peter C KindSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.
T Ian SimpsonSchool of Informatics, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-0495-7187
Victor Lj TybulewiczThe Francis Crick Institute, London, United Kingdom.ORCID 0000-0003-2439-0798
David Ja WyllieSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-4957-6049
Elizabeth Mc FisherDepartment of Neurodegenerative Disease, UCL Institute of Neurology, London, United Kingdom.
Sally LowellMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-4018-9480
Siddharthan ChandranMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Giles E HardinghamSchool of Biomedical Sciences, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0002-7629-5314
MRC Centre for Regenerative Medicine · GBUniversity of Edinburgh · GBNational Centre for Biological Sciences · INUniversity College London · GBLifeArc · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G0601056Medical Research Council G0902044Medical Research Council MR/K014137/1Wellcome Trust
6 · The paper itself

Abstract

Evolutionary differences in gene regulation between humans and lower mammalian experimental systems are incompletely understood, a potential translational obstacle that is challenging to surmount in neurons, where primary tissue availability is poor. Rodent-based studies show that activity-dependent transcriptional programs mediate myriad functions in neuronal development, but the extent of their conservation in human neurons is unknown. We compared activity-dependent transcriptional responses in developing human stem cell-derived cortical neurons with those induced in developing primary- or stem cell-derived mouse cortical neurons. While activity-dependent gene-responsiveness showed little dependence on developmental stage or origin (primary tissue vs. stem cell), notable species-dependent differences were observed. Moreover, differential species-specific gene ortholog regulation was recapitulated in aneuploid mouse neurons carrying human chromosome-21, implicating promoter/enhancer sequence divergence as a factor, including human-specific activity-responsive AP-1 sites. These findings support the use of human neuronal systems for probing transcriptional responses to physiological stimuli or indeed pharmaceutical agents.

Indexed as

Biological EvolutionGene Expression Regulation, DevelopmentalTranscription, GeneticAnimalsCells, CulturedHumansMiceNeural Stem CellsNeuronscalcium signalingevolutionary biologygene expressiongenomicshumanmouseneuronal activityneurosciencetranscription

Identifiers

PMID27692071
PMCPMC5092045
OpenAlexW2527088361

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.