Evidence map›Paper›PMID 27688836›Full record

ArticleStandards in genomic sciences2016

Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium.

Shumei Zhang, Wei Jiang, Jing Li, Liqiang Meng, Xu Cao, Jihua Hu, Yushuai Liu, Jingyu Chen, Changqing Sha

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shumei ZhangInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Wei JiangInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Jing LiInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Liqiang MengInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Xu CaoInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Jihua HuInstitute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Yushuai LiuInstitute of Microbiology, Heilongjiang Academy of Sciences, Harbin, 150010 China ; Institute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Jingyu ChenInstitute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China.
Changqing ShaInstitute of Advanced Technology, Heilongjiang Academy of Sciences, Harbin, 150020 China ; Heilongjiang Academy of Sciences, Harbin, 150001 China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus amyloliquefaciens TF28 is a biocontrol endophytic bacterium that is capable of inhibition of a broad range of plant pathogenic fungi. The strain has the potential to be developed into a biocontrol agent for use in agriculture. Here we report the whole-genome shotgun sequence of the strain. The genome size of B. amyloliquefaciens TF28 is 3,987,635 bp which consists of 3754 protein-coding genes, 65 tandem repeat sequences, 47 minisatellite DNA, 2 microsatellite DNA, 63 tRNA, 7rRNA, 6 sRNA, 3 prophage and CRISPR domains.

Indexed as

Bacillus amyloliquefaciensBiocontrolBroad spectrumEndophytic bacteriumGenome sequence

Identifiers

PMID27688836
PMCPMC5031281

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.