Evidence map›Paper›PMID 27688401›Full record

ArticleGenes & development2016

Functional interplay between Mediator and TFIIB in preinitiation complex assembly in relation to promoter architecture.

Thomas Eychenne, Elizaveta Novikova, Marie-Bénédicte Barrault, Olivier Alibert, Claire Boschiero, Nuno Peixeiro, David Cornu, Virginie Redeker, Laurent Kuras, Pierre Nicolas and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. Unique Role of Med8 in Ace2 Recruitment and Target Gene Expression inJournal of microbiology and biotechnology · 2025
    Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Twenty years of Mediator complex structural studies.Biochemical Society transactions · 2019
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Transcription regulation by the Mediator complex.Nature reviews. Molecular cell biology · 2018
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Thomas EychenneInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Elizaveta NovikovaInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Marie-Bénédicte BarraultInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Olivier AlibertLaboratoire d'Exploration Fonctionnelle des Génomes (LEFG), Institut de Radiobiologie Cellulaire et Moléculaire (IRCM), CEA, Genopole G2, F-91057 Evry Cedex, France.
Claire BoschieroInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Nuno PeixeiroInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
David CornuService d'Identification et de Caractérisation des Protéines par Spectrométrie de Masse (SICaPS), CNRS, F-91198 Gif-sur-Yvette Cedex, France.
Virginie RedekerService d'Identification et de Caractérisation des Protéines par Spectrométrie de Masse (SICaPS), CNRS, F-91198 Gif-sur-Yvette Cedex, France.
Laurent KurasInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Pierre NicolasMathematiques et Informatique Appliquées du Génome à l'Environnement (MaIAGE), Institut National de la Recherche Agronomique (INRA), Université Paris-Saclay, 78350 Jouy-en-Josas, France.
Michel WernerInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Julie SoutourinaInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Université Paris Sud, Université Paris Saclay, F-91198 Gif-sur-Yvette Cedex, France.
Institut de Biologie et Technologies · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut de Biologie Intégrative de la Cellule · FRCEA Paris-Saclay · FRInstitut des Neurosciences Paris-Saclay · FRMathématiques et Informatique Appliquées du Génome à l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mediator is a large coregulator complex conserved from yeast to humans and involved in many human diseases, including cancers. Together with general transcription factors, it stimulates preinitiation complex (PIC) formation and activates RNA polymerase II (Pol II) transcription. In this study, we analyzed how Mediator acts in PIC assembly using in vivo, in vitro, and in silico approaches. We revealed an essential function of the Mediator middle module exerted through its Med10 subunit, implicating a key interaction between Mediator and TFIIB. We showed that this Mediator-TFIIB link has a global role on PIC assembly genome-wide. Moreover, the amplitude of Mediator's effect on PIC formation is gene-dependent and is related to the promoter architecture in terms of TATA elements, nucleosome occupancy, and dynamics. This study thus provides mechanistic insights into the coordinated function of Mediator and TFIIB in PIC assembly in different chromatin contexts.

Indexed as

ChromatinMediator ComplexMutationPromoter Regions, GeneticProtein BindingProtein MultimerizationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIBChromatinMediator ComplexSaccharomyces cerevisiae ProteinsTranscription Factor TFIIBMediatorpreinitiation complexpromoter architectureRNA polymerase II transcriptionSaccharomyces cerevisiaeTFIIB

Identifiers

PMID27688401
PMCPMC5066617
OpenAlexW2525992712

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.