Evidence map›Paper›PMID 27688341›Full record

ArticleGenome announcements2016

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Sagar M Utturkar, Edward A Bayer, Ilya Borovok, Raphael Lamed, Richard A Hurt, Miriam L Land, Dawn M Klingeman, Dwayne Elias, Jizhong Zhou, Marcel Huntemann and 15 more

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Firmicutes-enriched ISBiotechnology for biofuels · 2018
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Sagar M UtturkarGraduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA.
Edward A BayerDepartment of Biological Chemistry, The Weizmann Institute of Science, Rehovot, Israel.
Ilya BorovokDepartment of Molecular Microbiology and Biotechnology, Tel-Aviv University, Ramat Aviv, Israel.
Raphael LamedDepartment of Molecular Microbiology and Biotechnology, Tel-Aviv University, Ramat Aviv, Israel.
Richard A HurtBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Miriam L LandBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Dawn M KlingemanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA BioEnergy Science Center, Oak Ridge, Tennessee, USA.
Dwayne EliasBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID http://orcid.org/0000-0002-4469-6391
Jizhong ZhouInstitute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Alicia ClumDOE Joint Genome Institute, Walnut Creek, California, USA.
Manoj PillayDOE Joint Genome Institute, Walnut Creek, California, USA.
Krishnaveni PalaniappanDOE Joint Genome Institute, Walnut Creek, California, USA.
Neha VargheseDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia MikhailovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Dimitrios StamatisDOE Joint Genome Institute, Walnut Creek, California, USA.
T B K ReddyDOE Joint Genome Institute, Walnut Creek, California, USA.
Chew Yee NganDOE Joint Genome Institute, Walnut Creek, California, USA.
Chris DaumDOE Joint Genome Institute, Walnut Creek, California, USA.
Nicole ShapiroDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Steven D BrownGraduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA BioEnergy Science Center, Oak Ridge, Tennessee, USA brownsd@ornl.gov.
Joint Genome Institute · USOak Ridge National Laboratory · USTel Aviv University · ILUniversity of Oklahoma · USUniversity of Tennessee at Knoxville · USWeizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We and others have shown the utility of long sequence reads to improve genome assembly quality. In this study, we generated PacBio DNA sequence data to improve the assemblies of draft genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Identifiers

PMID27688341
PMCPMC5043559
OpenAlexW2526539545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.