Evidence map›Paper›PMID 27686865›Full record

ArticleScientific reports2016

The Architecture of the Cytoplasmic Region of Type III Secretion Systems.

Fumiaki Makino, Dakang Shen, Naoko Kajimura, Akihiro Kawamoto, Panayiota Pissaridou, Henry Oswin, Maria Pain, Isabel Murillo, Keiichi Namba, Ariel J Blocker

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
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  11. Article
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  15. Microbiology catches the cryo-EM bug.Current opinion in microbiology · 2018
    Review
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fumiaki MakinoSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Dakang ShenSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Naoko KajimuraSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Akihiro KawamotoGraduate School of Frontier Biosciences, Osaka University, Japan.
Panayiota PissaridouSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Henry OswinSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Maria PainSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Isabel MurilloSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.
Keiichi NambaGraduate School of Frontier Biosciences, Osaka University, Japan.
Ariel J BlockerSchools of Cellular &Molecular Medicine and Biochemistry, Faculty of Biomedical Sciences, University of Bristol, University Walk, United Kingdom.

Funding

Medical Research Council MR/J002097/1
6 · The paper itself

Abstract

Type III secretion systems (T3SSs) are essential devices in the virulence of many Gram-negative bacterial pathogens. They mediate injection of protein effectors of virulence from bacteria into eukaryotic host cells to manipulate them during infection. T3SSs involved in virulence (vT3SSs) are evolutionarily related to bacterial flagellar protein export apparatuses (fT3SSs), which are essential for flagellar assembly and cell motility. The structure of the external and transmembrane parts of both fT3SS and vT3SS is increasingly well-defined. However, the arrangement of their cytoplasmic and inner membrane export apparatuses is much less clear. Here we compare the architecture of the cytoplasmic regions of the vT3SSs of Shigella flexneri and the vT3SS and fT3SS of Salmonella enterica serovar Typhimurium at ~5 and ~4 nm resolution using electron cryotomography and subtomogram averaging. We show that the cytoplasmic regions of vT3SSs display conserved six-fold symmetric features including pods, linkers and an ATPase complex, while fT3SSs probably only display six-fold symmetry in their ATPase region. We also identify other morphological differences between vT3SSs and fT3SSs, such as relative disposition of their inner membrane-attached export platform, C-ring/pods and ATPase complex. Finally, using classification, we find that both types of apparatuses can loose elements of their cytoplasmic region, which may therefore be dynamic.

Identifiers

PMID27686865
PMCPMC5043178

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.