Evidence map›Paper›PMID 27686363›Full record

ArticleBMC infectious diseases2016

Is Hepatitis Delta infections important in Brazil?

Maira Ferreira Cicero, Nathalia Mantovani Pena, Luiz Claudio Santana, Rafael Arnold, Rafael Gonçalves Azevedo, Élcio de Souza Leal, Ricardo Sobhie Diaz, Shirley Vasconcelos Komninakis

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Maira Ferreira CiceroRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Nathalia Mantovani PenaRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Luiz Claudio SantanaRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Rafael ArnoldRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Rafael Gonçalves AzevedoRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Élcio de Souza LealInstitute of Biological Sciences, Federal University of Pará, 01 Augusto Corrêa Street, Belém, Pará, Brazil.
Ricardo Sobhie DiazRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil.
Shirley Vasconcelos KomninakisRetrovirology Laboratory, Federal University of São Paulo, 781 Pedro de Toledo Street, São Paulo, São Paulo, Brazil. skomninakis@yahoo.com.br.
Universidade Federal de São Paulo · BRFaculdade de Medicina do ABC · BRUniversidade Federal do Pará · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Hepatitis Delta Virus (HDV) can increase the incidence of fulminant hepatitis. For this infection occurs, the host must also be infected with Hepatitis B Virus. Previous studies demonstrated the endemicity and near exclusivity of this infection in the Amazon region, and as a consequence of the difficulty in accessing this area we used dried blood spots (DBS) in sample collection. The aims of this study were to investigate the presence of recombination, to analyze the epidemiology, ancestry and evolutionary pressures on HDV in Brazil.

methodsBlood samples from 50 individuals were collected using dried-blood spots (DBS 903, Whatman), and sent via regular mail to Retrovirology Laboratory from Federal University of São Paulo, where the samples were processed. In the analysis the following software were used: PhyML, RDP, BEAST, jModelTest and CODEML.

resultsOur results confirm the prevalence of HDV-3 in the Amazon region of Brazil, with the absence of inter-genotypic recombination. It was identified a positive selection in probable epitopes of HDV on B lymphocytes that might indicate that the virus is changing to escape the humoral response of the host. The analysis of the time of the most common ancestor demonstrated the exponential growth of this virus in late 1970s that lasted until 1995, after which it remained constant. It was also observed a probable founder effect in two cities, which demonstrate the need to focus on prevention methods against HBV/HDV infection.

conclusionWe confirmed the prevalence of HDV-3 in the Amazon region of Brazil, without inter-genotypic recombination. The analysis of the time of the most common ancestor showed that this infection remain constant in the studied area. Taking into account the probable founder effect established in the cities of Rio Branco and Porto Velho, a focus on preventive methods is recommended against these infections.

Indexed as

BrazilDried-blood spotFounder effectHepatitis Delta virusPhylogenetic analysisPhylogeographytMRCA

Identifiers

PMID27686363
PMCPMC5041555
OpenAlexW2526234206

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.