Evidence map›Paper›PMID 27685088›Full record

ArticlePloS one

Pneumococcal Serotypes Colonise the Nasopharynx in Children at Different Densities.

Fernanda Rodrigues, Leon Danon, Begonia Morales-Aza, Paulina Sikora, Valtyr Thors, Muriel Ferreira, Katherine Gould, Jason Hinds, Adam Finn

Abstract read
In one paragraph

Article in PloS one. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Association between nasopharyngeal colonization with multiple pneumococcal serotypes and total pneumococcal colonization density in young Peruvian children.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2023
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  5. Dynamics of Colonization ofOpen forum infectious diseases · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Fernanda RodriguesHospital Pediátrico Coimbra, Centro Hospitalar e Universitário de Coimbra, Coimbra, Portugal.
Leon DanonSchool of Social and Community Medicine, University of Bristol, Bristol, United Kingdom.
Begonia Morales-AzaSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, United Kingdom.
Paulina SikoraSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, United Kingdom.
Valtyr ThorsSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, United Kingdom.
Muriel FerreiraHospital Pediátrico Coimbra, Centro Hospitalar e Universitário de Coimbra, Coimbra, Portugal.
Katherine GouldInstitute for Infection and Immunity, St. George's, University of London, London, United Kingdom.
Jason HindsInstitute for Infection and Immunity, St. George's, University of London, London, United Kingdom.
Adam FinnSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prevalence of pneumococcal serotypes in carriage and disease has been described but absolute serotype colonisation densities have not been reported. 515 paediatric nasal swab DNA extracts were subjected to lytA qPCR and molecular serotyping by microarray. Absolute serotype densities were derived from total pneumococcal density (qPCR cycle threshold and standard curve) and relative abundance (microarray) and varied widely. Compared to all serotype densities observed, the strongest evidence of differences was seen for serotypes 21 and 35B (higher) and 3, 38 and non-typeables (lower) (p<0.05) with a similar hierarchy when only a single serotype carriage was assessed. There was no evidence of any overall density differences between children with single or multiple serotypes detected but serotypes with mid-range densities were more prevalent. The hierarchy of distinct pneumococcal serotype carriage densities described here for the first time, may help explain the dynamics of transmission between children.

Identifiers

PMID27685088
PMCPMC5042462

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.