Evidence map›Paper›PMID 27684934›Full record

ReviewProtein science : a publication of the Protein Society2016

Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases.

Norbert Schormann, Natalia Zhukovskaya, Gregory Bedwell, Manunya Nuth, Richard Gillilan, Peter E Prevelige, Robert P Ricciardi, Surajit Banerjee, Debasish Chattopadhyay

Open access · bronzeAbstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Norbert SchormannDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, 35294.
Natalia ZhukovskayaDepartment of Microbiology, School of Dental Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, 19104.
Gregory BedwellDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, 35294.
Manunya NuthDepartment of Microbiology, School of Dental Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, 19104.ORCID 0000-0002-3457-8201
Richard GillilanMacCHESS (Macromolecular Diffraction Facility at CHESS) Cornell University, Ithaca, New York, 14853.
Peter E PreveligeDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, 35294.
Robert P RicciardiDepartment of Microbiology, School of Dental Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, 19104.
Surajit BanerjeeDepartment of Chemistry and Chemical Biology, Cornell University, and NE-CAT, Argonne, Illinois, 60439.
Debasish ChattopadhyayDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, 35294.
University of Alabama at Birmingham · USUniversity of Pennsylvania · USArgonne National Laboratory · USCornell University · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P41 GM103485
6 · The paper itself

Abstract

Uracil-DNA glycosylases are ubiquitous enzymes, which play a key role repairing damages in DNA and in maintaining genomic integrity by catalyzing the first step in the base excision repair pathway. Within the superfamily of uracil-DNA glycosylases family I enzymes or UNGs are specific for recognizing and removing uracil from DNA. These enzymes feature conserved structural folds, active site residues and use common motifs for DNA binding, uracil recognition and catalysis. Within this family the enzymes of poxviruses are unique and most remarkable in terms of amino acid sequences, characteristic motifs and more importantly for their novel non-enzymatic function in DNA replication. UNG of vaccinia virus, also known as D4, is the most extensively characterized UNG of the poxvirus family. D4 forms an unusual heterodimeric processivity factor by attaching to a poxvirus-specific protein A20, which also binds to the DNA polymerase E9 and recruits other proteins necessary for replication. D4 is thus integrated in the DNA polymerase complex, and its DNA-binding and DNA scanning abilities couple DNA processivity and DNA base excision repair at the replication fork. The adaptations necessary for taking on the new function are reflected in the amino acid sequence and the three-dimensional structure of D4. An overview of the current state of the knowledge on the structure-function relationship of D4 is provided here.

Indexed as

Amino Acid MotifsDNA ReplicationDNA, ViralPoxviridaeUracil-DNA GlycosidaseViral ProteinsDNA, ViralUracil-DNA GlycosidaseViral Proteinsantiviral agentsDNA polymerase holoenzymeDNA repairpoxvirusprocessivity factorreplicationuracil-DNA glycosylase

Identifiers

PMID27684934
PMCPMC5119566
OpenAlexW2524826911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.