Evidence map›Paper›PMID 27683574›Full record

ArticleFrontiers in microbiology2016

Transcription Profiling Analysis of Mango-Fusarium mangiferae Interaction.

Feng Liu, Jing-Bo Wu, Ru-Lin Zhan, Xiong-Chang Ou

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Transcriptomic Analysis on Responses of Murine Lungs toFrontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Feng LiuKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences Zhanjiang, China.
Jing-Bo WuKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences Zhanjiang, China.
Ru-Lin ZhanKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences Zhanjiang, China.
Xiong-Chang OuKey Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Southern Subtropical Crops Research Institute, Chinese Academy of Tropical Agricultural Sciences Zhanjiang, China.
Chinese Academy of Tropical Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malformation caused by Fusarium mangiferae is one of the most destructive mango diseases affecting the canopy and floral development, leading to dramatic reduction in fruit yield. To further understand the mechanism of interaction between mango and F. mangiferae, we monitored the transcriptome profiles of buds from susceptible mango plants, which were challenged with F. mangiferae. More than 99 million reads were deduced by RNA-sequencing and were assembled into 121,267 unigenes. Based on the sequence similarity searches, 61,706 unigenes were identified, of which 21,273 and 50,410 were assigned to gene ontology categories and clusters of orthologous groups, respectively, and 33,243 were mapped to 119 KEGG pathways. The differentially expressed genes of mango were detected, having 15,830, 26,061, and 20,146 DEGs respectively, after infection for 45, 75, and 120 days. The analysis of the comparative transcriptome suggests that basic defense mechanisms play important roles in disease resistance. The data also show the transcriptional responses of interactions between mango and the pathogen and more drastic changes in the host transcriptome in response to the pathogen. These results could be used to develop new methods to broaden the resistance of mango to malformation, including the over-expression of key mango genes.

Indexed as

gene expressionmangomango malformation diseaseplant–pathogen interactiontranscriptome

Identifiers

PMID27683574
PMCPMC5022174
OpenAlexW2519157822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.