Evidence map›Paper›PMID 27683218›Full record

ArticleNucleic acids research2016

Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa.

Juthamas Jaroensuk, Sopapan Atichartpongkul, Yok Hian Chionh, Yee Hwa Wong, Chong Wai Liew, Megan E McBee, Narumon Thongdee, Erin G Prestwich, Michael S DeMott, Skorn Mongkolsuk and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 62 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
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  7. Review
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  13. The modification landscape ofRNA (New York, N.Y.) · 2024
    Article
  14. Article
  15. The modification landscape ofbioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 4 countries.

Juthamas JaroensukApplied Biological Sciences Program, Chulabhorn Graduate Institute, Bangkok, Thailand.
Sopapan AtichartpongkulLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Yok Hian ChionhSingapore-MIT Alliance for Research and Technology, Singapore.
Yee Hwa WongSchool of Biological Sciences, Nanyang Technological University, Singapore.
Chong Wai LiewNTU Institute of Structural Biology, Nanyang Technological University, Singapore.
Megan E McBeeSingapore-MIT Alliance for Research and Technology, Singapore.
Narumon ThongdeeApplied Biological Sciences Program, Chulabhorn Graduate Institute, Bangkok, Thailand.
Erin G PrestwichDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Michael S DeMottDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Skorn MongkolsukLaboratory of Biotechnology, Chulabhorn Research Institute, Bangkok, Thailand.
Peter C DedonSingapore-MIT Alliance for Research and Technology, Singapore pcdedon@mit.edu.
Julien LescarSchool of Biological Sciences, Nanyang Technological University, Singapore julien@ntu.edu.sg.
Mayuree FuangthongApplied Biological Sciences Program, Chulabhorn Graduate Institute, Bangkok, Thailand mayuree@cri.or.th.ORCID 0000-0001-5684-9001
Chulabhorn Graduate Institute · THSingapore-MIT Alliance for Research and Technology · SGMassachusetts Institute of Technology · USNanyang Technological University · SGCentre National de la Recherche Scientifique · FRChulabhorn Research Institute · THMahidol University · TH

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Quantitative analysis of damage to the nucleotide poolR21ES022858 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DEDON, PETER C · 2014 to 2015
$429k
NIEHS NIH HHS P30 ES002109NIEHS NIH HHS R21 ES022858
6 · The paper itself

Abstract

Bacteria respond to environmental stresses using a variety of signaling and gene expression pathways, with translational mechanisms being the least well understood. Here, we identified a tRNA methyltransferase in Pseudomonas aeruginosa PA14, trmJ, which confers resistance to oxidative stress. Analysis of tRNA from a trmJ mutant revealed that TrmJ catalyzes formation of Cm, Um, and, unexpectedly, Am. Defined in vitro analyses revealed that tRNA

Indexed as

Oxidative StressAmino Acid SequenceBacterial ProteinsBase SequenceCatalytic DomainCrystallography, X-RayHydrogen PeroxideMethylationModels, MolecularPseudomonas aeruginosaRNA, BacterialRNA, TransfertRNA MethyltransferasesBacterial ProteinsHydrogen PeroxideRNA, BacterialRNA, TransfertRNA Methyltransferases

Identifiers

PMID27683218
PMCPMC5159551
OpenAlexW2525406262

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.