Evidence map›Paper›PMID 27683107›Full record

ArticleOncotarget2016

Human PDE4D isoform composition is deregulated in primary prostate cancer and indicative for disease progression and development of distant metastases.

René Böttcher, Kalyan Dulla, Dianne van Strijp, Natasja Dits, Esther I Verhoef, George S Baillie, Geert J L H van Leenders, Miles D Houslay, Guido Jenster, Ralf Hoffmann

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Review
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  4. Selagibenzophenone B and Its Derivatives:ACS bio & med chem Au · 2024
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  10. Article
  11. PDE4 subtypes in cancer.Oncogene · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

René BöttcherDepartment of Urology, Erasmus Medical Center, Rotterdam, The Netherlands.
Kalyan DullaDepartment of Oncology Solutions and Precision Diagnostics, Philips Research Europe, Eindhoven, The Netherlands.
Dianne van StrijpDepartment of Oncology Solutions and Precision Diagnostics, Philips Research Europe, Eindhoven, The Netherlands.
Natasja DitsDepartment of Urology, Erasmus Medical Center, Rotterdam, The Netherlands.
Esther I VerhoefDepartment of Pathology, Erasmus Medical Center, Rotterdam, The Netherlands.
George S BaillieInstitute of Cardiovascular and Medical Science, University of Glasgow, Glasgow, Scotland, UK.
Geert J L H van LeendersDepartment of Pathology, Erasmus Medical Center, Rotterdam, The Netherlands.
Miles D HouslayInstitute of Pharmaceutical Science, King's College London, London, UK.
Guido JensterDepartment of Urology, Erasmus Medical Center, Rotterdam, The Netherlands.
Ralf HoffmannDepartment of Oncology Solutions and Precision Diagnostics, Philips Research Europe, Eindhoven, The Netherlands.
Erasmus MC · NLPhilips (Netherlands) · NLKing's College London · GBTechnical University of Applied Sciences Wildau · DEUniversity of Glasgow · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphodiesterase 4D7 was recently shown to be specifically over-expressed in localized prostate cancer, raising the question as to which regulatory mechanisms are involved and whether other isoforms of this gene family (PDE4D) are affected under the same conditions.We investigated PDE4D isoform composition in prostatic tissues using a total of seven independent expression datasets and also included data on DNA methylation, copy number and AR and ERG binding in PDE4D promoters to gain insight into their effect on PDE4D transcription.We show that expression of PDE4D isoforms is consistently altered in primary human prostate cancer compared to benign tissue, with PDE4D7 being up-regulated while PDE4D5 and PDE4D9 are down-regulated. Disease progression is marked by an overall down-regulation of long PDE4D isoforms, while short isoforms (PDE4D1/2) appear to be relatively unaffected. While these alterations seem to be independent of copy number alterations in the PDE4D locus and driven by AR and ERG binding, we also observed increased DNA methylation in the promoter region of PDE4D5, indicating a long lasting alteration of the isoform composition in prostate cancer tissues.We propose two independent metrics that may serve as diagnostic and prognostic markers for prostate disease: (PDE4D7 - PDE4D5) provides an effective means for distinguishing PCa from normal adjacent prostate, whereas PDE4D1/2 - (PDE4D5 + PDE4D7 + PDE4D9) offers strong prognostic potential to detect aggressive forms of PCa and is associated with metastasis free survival. Overall, our findings highlight the relevance of PDE4D as prostate cancer biomarker and potential drug target.

Indexed as

Disease ProgressionPromoter Regions, GeneticBiomarkers, TumorCyclic Nucleotide Phosphodiesterases, Type 4DNA MethylationDown-RegulationFollow-Up StudiesGene DosageGene Expression Regulation, NeoplasticHumansIsoenzymesKaplan-Meier EstimateMaleNeoplasm MetastasisPrognosisProstatic NeoplasmsAR protein, humanBiomarkers, TumorCyclic Nucleotide Phosphodiesterases, Type 4ERG protein, humanIsoenzymesPDE4D protein, humanReceptors, AndrogenTranscriptional Regulator ERGandrogen receptorbiomarkercAMPERGphosphodiesterase

Identifiers

PMID27683107
PMCPMC5342582
OpenAlexW2521946386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.