Evidence map›Paper›PMID 27682584›Full record

ArticleMolecular biology of the cell2016

Arl13b regulates Shh signaling from both inside and outside the cilium.

Laura E Mariani, Maarten F Bijlsma, Anna A Ivanova, Sarah K Suciu, Richard A Kahn, Tamara Caspary

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Functions and trafficking mechanisms of RIC-8 inMolecular biology of the cell · 2026
    Article
  3. The nociceptor primary cilium.Brain : a journal of neurology · 2026
    Review
  4. Article
  5. Article
  6. Ciliary ARL13B Is Essential for Vision and Morphogenesis of Cone Outer Segments.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  7. ARL13B-Cerulean rescuesbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
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  11. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Laura E Mariani*Department of Human Genetics, Emory University, Atlanta, GA, USA Neuroscience Graduate Program, Emory University, Atlanta, GA, USA.
Maarten F BijlsmaLaboratory for Experimental Oncology and Radiobiology, Center for Experimental and Molecular Medicine, Academic Medical Center and Cancer Center Amsterdam, Amsterdam, The Netherlands.
Anna A IvanovaDepartment of Biochemistry, Emory University, Atlanta, GA, USA.
Sarah K Suciu*Department of Human Genetics, Emory University, Atlanta, GA, USA Genetics and Molecular Biology Graduate Program, Emory University, Atlanta, GA, USA.
Richard A KahnDepartment of Biochemistry, Emory University, Atlanta, GA, USA.
Tamara Caspary*Department of Human Genetics, Emory University, Atlanta, GA, USA tcaspar@emory.edu.
Emory University · USAmsterdam UMC Location University of Amsterdam · NL

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
ENNCF - Viral Vector CoreP30NS055077 · NINDS · EMORY UNIVERSITY · PI LEVEY, ALLAN I · 2008 to 2018
$6.8M
VIsion Science Training in AtlantaT32EY007092 · NEI · EMORY UNIVERSITY · PI Machelle T. Pardue · 1985 to 2026
$4.6M
TRAINING IN SYSTEMS AND INTEGRATIVE BIOLOGY:NEUROSCIENCET32GM008605 · NIGMS · EMORY UNIVERSITY · PI SMITH, YOLAND · 1996 to 2015
$4.2M
Training In Systems And Integrative Biology NeuroscienceT32NS096050 · NINDS · EMORY UNIVERSITY · PI Yoland Smith · 2016 to 2026
$3.9M
Mechanisms underlying Joubert syndrome related brain malformationsR01NS090029 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ANTON, EVA S, CASPARY, TAMARA J. · 2015 to 2018
$1.9M
Biology of the ARL13B GTPaseR01GM110663 · NIGMS · EMORY UNIVERSITY · PI CASPARY, TAMARA J., KAHN, RICHARD A · 2014 to 2017
$1.7M
The role of mouse ARL13B in cell diversification during spinal cord developmentR01NS056380 · NINDS · EMORY UNIVERSITY · PI CASPARY, TAMARA J. · 2007 to 2010
$1.5M
Mechanisms underlying Joubert syndrome related brain malformationsR56NS090029 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ANTON, EVA S, CASPARY, TAMARA J. · 2014 to 2014
$511k
NEI NIH HHS T32 EY007092NIGMS NIH HHS R01 GM110663NIGMS NIH HHS T32 GM008490NIGMS NIH HHS T32 GM008605NINDS NIH HHS P30 NS055077NINDS NIH HHS R01 NS056380NINDS NIH HHS R01 NS090029NINDS NIH HHS R56 NS090029NINDS NIH HHS T32 NS096050
6 · The paper itself

Abstract

The regulatory GTPase Arl13b localizes to primary cilia, where it regulates Sonic hedgehog (Shh) signaling. Missense mutations in ARL13B can cause the ciliopathy Joubert syndrome, while the mouse null allele is embryonic lethal. We used mouse embryonic fibroblasts as a system to determine the effects of Arl13b mutations on Shh signaling. We tested a total of seven different mutants, three JS-causing variants, two point mutants predicted to alter guanine nucleotide handling, one that disrupts cilia localization, and one that prevents palmitoylation and thus membrane binding, in assays of transcriptional and non-transcriptional Shh signaling. We found that mutations disrupting Arl13b's palmitoylation site, cilia localization signal, or GTPase handling altered the Shh response in distinct assays of transcriptional or non-transcriptional signaling. In contrast, JS-causing mutations in Arl13b did not affect Shh signaling in these same assays, suggesting these mutations result in more subtle defects, likely affecting only a subset of signaling outputs. Finally, we show that restricting Arl13b from cilia interferes with its ability to regulate Shh-stimulated chemotaxis, despite previous evidence that cilia themselves are not required for this non-transcriptional Shh response. This points to a more complex relationship between the ciliary and non-ciliary roles of this regulatory GTPase than previously envisioned.

Identifiers

PMID27682584
PMCPMC5170560
OpenAlexW2524685945

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.