Evidence map›Paper›PMID 27681620›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Structure-guided enzymology of the lipid A acyltransferase LpxM reveals a dual activity mechanism.

Dustin Dovala, Christopher M Rath, Qijun Hu, William S Sawyer, Steven Shia, Robert A Elling, Mark S Knapp, Louis E Metzger

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  11. Rational engineering ofFrontiers in microbiology · 2024
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  18. Article
  19. Monotopic Membrane Proteins Join the Fold.Trends in biochemical sciences · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Dustin DovalaInfectious Diseases, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Christopher M RathInfectious Diseases, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Qijun HuInfectious Diseases, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
William S SawyerInfectious Diseases, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Steven ShiaGlobal Discovery Chemistry, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Robert A EllingGlobal Discovery Chemistry, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Mark S KnappGlobal Discovery Chemistry, Novartis Institutes for BioMedical Research, Emeryville, CA 94608.
Louis E MetzgerInfectious Diseases, Novartis Institutes for BioMedical Research, Emeryville, CA 94608; louis.metzger_iv@novartis.com.
Novartis (United States) · USNovartis (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gram-negative bacteria possess a characteristic outer membrane, of which the lipid A constituent elicits a strong host immune response through the Toll-like receptor 4 complex, and acts as a component of the permeability barrier to prevent uptake of bactericidal compounds. Lipid A species comprise the bulk of the outer leaflet of the outer membrane and are produced through a multistep biosynthetic pathway conserved in most Gram-negative bacteria. The final steps in this pathway involve the secondary acylation of lipid A precursors. These are catalyzed by members of a superfamily of enzymes known as lysophospholipid acyltransferases (LPLATs), which are present in all domains of life and play important roles in diverse biological processes. To date, characterization of this clinically important class of enzymes has been limited by a lack of structural information and the availability of only low-throughput biochemical assays. In this work, we present the structure of the bacterial LPLAT protein LpxM, and we describe a high-throughput, label-free mass spectrometric assay to characterize acyltransferase enzymatic activity. Using our structure and assay, we identify an LPLAT thioesterase activity, and we provide experimental evidence to support an ordered-binding and "reset" mechanistic model for LpxM function. This work enables the interrogation of other bacterial acyltransferases' structure-mechanism relationships, and the assay described herein provides a foundation for quantitatively characterizing the enzymology of any number of clinically relevant LPLAT proteins.

Indexed as

AcyltransferasesAmino Acid SequenceBacterial ProteinsBinding SitesConsensus SequenceEnzyme ActivationGram-Negative BacteriaHydrophobic and Hydrophilic InteractionsKineticsLipid AModels, MolecularPosition-Specific Scoring MatricesProtein BindingProtein ConformationStructure-Activity RelationshipThiolester HydrolasesAcyltransferasesBacterial ProteinsLipid AThiolester Hydrolasesacyltransferaselipid ALpxMphosphopantetheine ejection assayRapidFire mass spectrometry

Identifiers

PMID27681620
PMCPMC5068295
OpenAlexW2526956263

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.