Evidence map›Paper›PMID 27681385›Full record

ArticleHuman genetics2016

De novo missense variants in PPP1CB are associated with intellectual disability and congenital heart disease.

Lijiang Ma, Yavuz Bayram, Heather M McLaughlin, Megan T Cho, Alyson Krokosky, Clesson E Turner, Kristin Lindstrom, Caleb P Bupp, Katey Mayberry, Weiyi Mu and 18 more

Abstract read
In one paragraph

Article in Human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Regulation of Synaptic Transmission and Plasticity by Protein Phosphatase 1.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Review
  10. Article
  11. Article
  12. Protein phosphatases in the regulation of mitosis.The Journal of cell biology · 2019
    Review
  13. cAMP regulation of protein phosphatases PP1 and PP2A in brain.Biochimica et biophysica acta. Molecular cell research · 2019
    Review
  14. Article
  15. SHOC2-MRAS-PP1 complex positively regulates RAF activity and contributes to Noonan syndrome pathogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model.American journal of physiology. Heart and circulatory physiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 10 institutions in 2 countries.

Lijiang MaDepartment of Pediatrics, Columbia University Medical Center, 1150 St. Nicholas Avenue, New York, NY, 10032, USA.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Heather M McLaughlinGeneDx, Gaithersburg, MD, USA.
Megan T ChoGeneDx, Gaithersburg, MD, USA.
Alyson KrokoskyWalter Reed National Military Medical Center, Bethesda, MD, USA.
Clesson E TurnerWalter Reed National Military Medical Center, Bethesda, MD, USA.
Kristin LindstromDivision of Genetics and Metabolism, Phoenix Children's Hospital, Phoenix, AZ, USA.
Caleb P BuppSpectrum Health, Grand Rapids, MI, USA.
Katey MayberrySpectrum Health, Grand Rapids, MI, USA.
Weiyi MuMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Joann BodurthaMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Veronique WeinsteinDivision of Genetics and Metabolism, Children's National Medical Center, Washington, DC, USA.
Neda ZadehGenetics Center, Orange, CA, USA.
Wendy AlcarazAmbry Genetics, Aliso Viejo, CA, USA.
Zöe PowisAmbry Genetics, Aliso Viejo, CA, USA.
Yunru ShaoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Daryl A ScottDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Andrea M LewisDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Janson J WhiteDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Shalani N JhangianiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Elif Yilmaz GulecMedical Genetics Section, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul, Turkey.
Seema R LalaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Kyle RettererGeneDx, Gaithersburg, MD, USA.
Rhonda E SchnurGeneDx, Gaithersburg, MD, USA.
Ingrid M WentzensenGeneDx, Gaithersburg, MD, USA.
Sherri BaleGeneDx, Gaithersburg, MD, USA.
Wendy K ChungDepartment of Pediatrics, Columbia University Medical Center, 1150 St. Nicholas Avenue, New York, NY, 10032, USA. wkc15@columbia.edu.
Baylor College of Medicine · USAmbry Genetics (United States) · USColumbia University Irving Medical Center · USJohns Hopkins University · USSpectrum Health · USWalter Reed National Military Medical Center · USChildren's National · USİstanbul Kanuni Sultan Süleyman Eğitim ve Araştırma Hastanesi · TRPhoenix Children's Hospital · USTexas Children's Hospital · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR01GM030518 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HONIG, BARRY H · 1985 to 2020
$4.5M
COMPUTER STUDIES OF PROTEIN STRUCTURE AND FUNCTIONR37GM030518 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HONIG, BARRY H · 1995 to 2004
$1.5M
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS R01 GM030518NIGMS NIH HHS R37 GM030518NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

Intellectual disabilities are genetically heterogeneous and can be associated with congenital anomalies. Using whole-exome sequencing (WES), we identified five different de novo missense variants in the protein phosphatase-1 catalytic subunit beta (PPP1CB) gene in eight unrelated individuals who share an overlapping phenotype of dysmorphic features, macrocephaly, developmental delay or intellectual disability (ID), congenital heart disease, short stature, and skeletal and connective tissue abnormalities. Protein phosphatase-1 (PP1) is a serine/threonine-specific protein phosphatase involved in the dephosphorylation of a variety of proteins. The PPP1CB gene encodes a PP1 subunit that regulates the level of protein phosphorylation. All five altered amino acids we observed are highly conserved among the PP1 subunit family, and all are predicted to disrupt PP1 subunit binding and impair dephosphorylation. Our data suggest that our heterozygous de novo PPP1CB pathogenic variants are associated with syndromic intellectual disability.

Indexed as

Genetic Association StudiesAdolescentAdultChildChild, PreschoolExomeFemaleGenetic Predisposition to DiseaseHeart Defects, CongenitalHumansIntellectual DisabilityMaleMutation, MissensePhosphorylationProtein Phosphatase 1PPP1CB protein, humanProtein Phosphatase 1

Identifiers

PMID27681385
PMCPMC5663278
OpenAlexW2523997858

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.