Evidence map›Paper›PMID 27681373›Full record

ArticlePLoS genetics2016

Dose-Dependent Regulation of Alternative Splicing by MBNL Proteins Reveals Biomarkers for Myotonic Dystrophy.

Stacey D Wagner, Adam J Struck, Riti Gupta, Dylan R Farnsworth, Amy E Mahady, Katy Eichinger, Charles A Thornton, Eric T Wang, J Andrew Berglund

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06747884 (Trial Readiness and Endpoint Assessment in Pediatric Myotonic Dystrophy Extension), which is not on this map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06747884 recruitingnot on this mapstarted 2025, after this paper: background citation

Trial Readiness and Endpoint Assessment in Pediatric Myotonic Dystrophy Extension

TypeobservationalSponsorVirginia Commonwealth UniversityRan2025 to 2030Enrolled200ConditionsCongenital Myotonic Dystrophy, Childhood Myotonic Dystrophy, Myotonic Dystrophy
3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
  2. Delpacibart etedesiran improves the molecular pathology of myotonic dystrophy type 1 in the phase 1/2 MARINA study.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Stacey D WagnerDepartment of Chemistry and Biochemistry, Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.ORCID http://orcid.org/0000-0003-3992-0798
Adam J StruckDepartment of Chemistry and Biochemistry, Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Riti GuptaDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America.
Dylan R FarnsworthDepartment of Biology, Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Amy E MahadyDepartment of Chemistry and Biochemistry, Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Katy EichingerDepartment of Neurology, University of Rochester Medical Center, Rochester, New York, United States of America.
Charles A ThorntonDepartment of Neurology, University of Rochester Medical Center, Rochester, New York, United States of America.
Eric T WangDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
J Andrew BerglundDepartment of Chemistry and Biochemistry, Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
University of Oregon · USUniversity of Rochester Medical Center · USJohns Hopkins University · USUniversity of Florida · US

Funding

Training and Educational CoreU54NS048843 · NINDS · UNIVERSITY OF ROCHESTER · PI DIRKSEN, ROBERT T · 2003 to 2017
$21.9M
CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Graduate Training in Genetics Administrative Supplement - Career Curriculum DevelopmentT32GM007413 · NIGMS · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 1985 to 2022
$7.8M
Deep Sequencing Analysis of mRNA Isoform Expression Changes in Myotonic DystrophyRC2HG005624 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B, COOPER, THOMAS A · 2009 to 2010
$2.9M
Ppst-transcriptional regulation of gene expression in neuromuscular diseaseDP5OD017865 · OD · UNIVERSITY OF FLORIDA · PI WANG, ERIC T · 2013 to 2017
$2.0M
Targeting a Toxic RNA with Small MoleculesR01AR059833 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2010 to 2014
$1.7M
Modulating the levels of a splicing factor to reveal the complexities of a spliciF32AR063565 · NIAMS · UNIVERSITY OF OREGON · PI WAGNER, STACEY DENISE · 2013 to 2015
$171k
NHGRI NIH HHS RC2 HG005624NIAMS NIH HHS F32 AR063565NIAMS NIH HHS R01 AR059833NIGMS NIH HHS T32 GM007231NIGMS NIH HHS T32 GM007413NIH HHS DP5 OD017865NINDS NIH HHS U54 NS048843
6 · The paper itself

Abstract

Alternative splicing is a regulated process that results in expression of specific mRNA and protein isoforms. Alternative splicing factors determine the relative abundance of each isoform. Here we focus on MBNL1, a splicing factor misregulated in the disease myotonic dystrophy. By altering the concentration of MBNL1 in cells across a broad dynamic range, we show that different splicing events require different amounts of MBNL1 for half-maximal response, and respond more or less steeply to MBNL1. Motifs around MBNL1 exon 5 were studied to assess how cis-elements mediate the MBNL1 dose-dependent splicing response. A framework was developed to estimate MBNL concentration using splicing responses alone, validated in the cell-based model, and applied to myotonic dystrophy patient muscle. Using this framework, we evaluated the ability of individual and combinations of splicing events to predict functional MBNL concentration in human biopsies, as well as their performance as biomarkers to assay mild, moderate, and severe cases of DM.

Identifiers

PMID27681373
PMCPMC5082313
OpenAlexW2524253406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.