Evidence map›Paper›PMID 27680493›Full record

ArticleNature communications2016

Aromatic thiol-mediated cleavage of N-O bonds enables chemical ubiquitylation of folded proteins.

Caroline E Weller, Abhinav Dhall, Feizhi Ding, Edlaine Linares, Samuel D Whedon, Nicholas A Senger, Elizabeth L Tyson, John D Bagert, Xiaosong Li, Ohara Augusto and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 62 citations in OpenAlex.

  1. Chemical Ligation of Backbone N-hydroxylated Peptides.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  2. Review
  3. Review
  4. Circular Engineered Sortase for Interrogating Histone H3 in Chromatin.Journal of the American Chemical Society · 2024
    Article
  5. A circular engineered sortase for interrogating histone H3 in chromatin.bioRxiv : the preprint server for biology · 2024
    Article
  6. Bioconjugate chemistry · 2024
    Article
  7. Signalling mechanisms and cellular functions of SUMO.Nature reviews. Molecular cell biology · 2022
    Review
  8. Review
  9. Insights in Post-Translational Modifications: Ubiquitin and SUMO.International journal of molecular sciences · 2022
    Review
  10. The chemical biology of ubiquitin.Biochimica et biophysica acta. General subjects · 2022
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. A Highly Efficient Synthesis of Polyubiquitin Chains.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2018
    Article
  18. Amide-forming chemical ligation viaProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Caroline E WellerDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Abhinav DhallDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Feizhi DingDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Edlaine LinaresDepartamento de Bioquímica, Instituto de Química-Universidade de São Paulo, São Paulo 05513-970, Brazil.
Samuel D WhedonDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Nicholas A SengerDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Elizabeth L TysonDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
John D BagertDepartment of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.
Xiaosong LiDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Ohara AugustoDepartamento de Bioquímica, Instituto de Química-Universidade de São Paulo, São Paulo 05513-970, Brazil.ORCID http://orcid.org/0000-0002-7220-4286
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
University of Washington · USUniversidade de São Paulo · BRPrinceton University · US

Funding

Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
NIGMS NIH HHS R01 GM110430
6 · The paper itself

Abstract

Access to protein substrates homogenously modified by ubiquitin (Ub) is critical for biophysical and biochemical investigations aimed at deconvoluting the myriad biological roles for Ub. Current chemical strategies for protein ubiquitylation, however, employ temporary ligation auxiliaries that are removed under harsh denaturing conditions and have limited applicability. We report an unprecedented aromatic thiol-mediated N-O bond cleavage and its application towards native chemical ubiquitylation with the ligation auxiliary 2-aminooxyethanethiol. Our interrogation of the reaction mechanism suggests a disulfide radical anion as the active species capable of cleaving the N-O bond. The successful semisynthesis of full-length histone H2B modified by the small ubiquitin-like modifier-3 (SUMO-3) protein further demonstrates the generalizability and compatibility of our strategy with folded proteins.

Identifiers

PMID27680493
PMCPMC5056422
OpenAlexW2525299666

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.