Evidence map›Paper›PMID 27679644›Full record

ArticleFrontiers in plant science2016

Isolation and Functional Characterization of a Lycopene β-cyclase Gene Promoter from Citrus.

Suwen Lu, Yin Zhang, Xiongjie Zheng, Kaijie Zhu, Qiang Xu, Xiuxin Deng

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. CitrusHorticulture research · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Independent activation of the BoMYB2 gene leading to purple traits in Brassica oleracea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. A Dual RepeatFrontiers in plant science · 2018
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Suwen LuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Yin ZhangKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Xiongjie ZhengKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Kaijie ZhuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Qiang XuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Xiuxin DengKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China.
Huazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lycopene β-cyclases are key enzymes located at the branch point of the carotenoid biosynthesis pathway. However, the transcriptional regulatory mechanisms of LCYb1 in citrus with abundant carotenoid accumulation are still unclear. To understand the molecular basis of CsLCYb1 expression, we isolated and functionally characterized the 5' upstream sequences of CsLCYb1 from citrus. The full-length CsLCYb1 promoter and a series of its 5' deletions were fused to the β-glucuronidase (GUS) reporter gene and transferred into different plants (tomato, Arabidopsis and citrus callus) to test the promoter activities. The results of all transgenic species showed that the 1584 bp upstream region from the translational start site displayed maximal promoter activity, and the minimal promoter containing 746 bp upstream sequences was sufficient for strong basal promoter activity. Furthermore, the CsLCYb1 promoter activity was developmentally and tissue-specially regulated in transgenic Arabidopsis, and it was affected by multiple hormones and environmental cues in transgenic citrus callus under various treatments. Finer deletion analysis identified an enhancer element existing as a tandem repeat in the promoter region between -574 to -513 bp and conferring strong promoter activity. The copy numbers of the enhancer element differed among various citrus species, leading to the development of a derived simple sequence repeat marker to distinguish different species. In conclusion, this study elucidates the expression characteristics of the LCYb1 promoter from citrus and further identifies a novel enhancer element required for the promoter activity. The characterized promoter fragment would be an ideal candidate for genetic engineering and seeking of upstream trans-acting elements.

Indexed as

carotenoidcis-elementcitrusenhancerlycopene β-cyclasepromoter

Identifiers

PMID27679644
PMCPMC5020073
OpenAlexW2520702378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.