Evidence map›Paper›PMID 27678523›Full record

ArticleG3 (Bethesda, Md.)2016

X Chromosome Crossover Formation and Genome Stability in Caenorhabditis elegans Are Independently Regulated by xnd-1.

T Brooke McClendon, Rana Mainpal, Francis R G Amrit, Michael W Krause, Arjumand Ghazi, Judith L Yanowitz

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

T Brooke McClendonMolecular Genetics and Developmental Biology Graduate Program, University of Pittsburgh School of Medicine, Pennsylvania.
Rana MainpalMagee-Womens Research Institute, Department of Obstetrics, Gynecology, and Reproductive Services University of Pittsburgh School of Medicine, Pennsylvania 15213.
Francis R G AmritDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pennsylvania 15224.
Michael W KrauseLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, Maryland 20892.
Arjumand GhaziDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pennsylvania 15224.
Judith L YanowitzMolecular Genetics and Developmental Biology Graduate Program, University of Pittsburgh School of Medicine, Pennsylvania jly@alum.mit.edu.
University of Pittsburgh · USMagee-Womens Research Institute · USNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Developmental Gene Expression In C elegansZIADK036117 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KRAUSE, MICHAEL · 2014 to 2025
$9.3M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Undergraduate Summer Research Supplement for 5R01GM104007-07: Characterization of a Meiotic Crossover Surveillance SystemR01GM104007 · NIGMS · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YANOWITZ, JUDITH L · 2013 to 2021
$2.6M
The Coordination of Lipid Synthesis and Breakdown in Metabolism and AgingR01AG051659 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GHAZI, ARJUMAND · 2016 to 2019
$1.6M
COELOMOCYTES IN C.ELEGANS--CELL FATE DETERMINATIONF32HD008715 · NICHD · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI YANOWITZ, JUDITH L · 2000 to 2002
$112k
NIA NIH HHS R01 AG051659NICHD NIH HHS F32 HD008715NIGMS NIH HHS R01 GM104007NIH HHS P40 OD010440
6 · The paper itself

Abstract

The germ line efficiently combats numerous genotoxic insults to ensure the high fidelity propagation of unaltered genomic information across generations. Yet, germ cells in most metazoans also intentionally create double-strand breaks (DSBs) to promote DNA exchange between parental chromosomes, a process known as crossing over. Homologous recombination is employed in the repair of both genotoxic lesions and programmed DSBs, and many of the core DNA repair proteins function in both processes. In addition, DNA repair efficiency and crossover (CO) distribution are both influenced by local and global differences in chromatin structure, yet the interplay between chromatin structure, genome integrity, and meiotic fidelity is still poorly understood. We have used the xnd-1 mutant of Caenorhabditis elegans to explore the relationship between genome integrity and crossover formation. Known for its role in ensuring X chromosome CO formation and germ line development, we show that xnd-1 also regulates genome stability. xnd-1 mutants exhibited a mortal germ line, high embryonic lethality, high incidence of males, and sensitivity to ionizing radiation. We discovered that a hypomorphic allele of mys-1 suppressed these genome instability phenotypes of xnd-1, but did not suppress the CO defects, suggesting it serves as a separation-of-function allele. mys-1 encodes a histone acetyltransferase, whose homolog Tip60 acetylates H2AK5, a histone mark associated with transcriptional activation that is increased in xnd-1 mutant germ lines, raising the possibility that thresholds of H2AK5ac may differentially influence distinct germ line repair events. We also show that xnd-1 regulated him-5 transcriptionally, independently of mys-1, and that ectopic expression of him-5 suppressed the CO defects of xnd-1 Our work provides xnd-1 as a model in which to study the link between chromatin factors, gene expression, and genome stability.

Indexed as

Crossing Over, GeneticGenomic InstabilityX ChromosomeAllelesAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatinDNA Breaks, Double-StrandedFertilityGene Expression RegulationGerm CellsMeiosisMutationPhenotypeCaenorhabditis elegans ProteinsChromatinxnd-1 protein, C elegansATMgenome instabilityionizing radiationmeiosisTip60

Identifiers

PMID27678523
PMCPMC5144962
OpenAlexW2529504561

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.