Evidence map›Paper›PMID 27678123›Full record

ArticleGenome biology and evolution2016

Comparative Genome Analysis of the Daptomycin-Resistant Streptococcus anginosus Strain J4206 Associated with Breakthrough Bacteremia.

Maliha Rahman, Scott V Nguyen, Kimberly A McCullor, Catherine J King, James H Jorgensen, W Michael McShan

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Maliha RahmanDepartment of Pharmaceutical Sciences, The University of Oklahoma College of PharmacyOklahoma, OK.
Scott V NguyenDepartment of Pharmaceutical Sciences, The University of Oklahoma College of PharmacyOklahoma, OK.
Kimberly A McCullorDepartment of Pharmaceutical Sciences, The University of Oklahoma College of PharmacyOklahoma, OK.
Catherine J KingDepartment of Pharmaceutical Sciences, The University of Oklahoma College of PharmacyOklahoma, OK.
James H JorgensenDepartment of Pathology, University of Texas Health Sciences Center at San Antonio, San Antonio, TX.
W Michael McShanDepartment of Pharmaceutical Sciences, The University of Oklahoma College of PharmacyOklahoma, OK William-McShan@ouhsc.edu.
University of Oklahoma · USRoman L. Hruska U.S. Meat Animal Research Center · USThe University of Texas Health Science Center at San Antonio · US

Funding

Bacteriophage Control of DNA Repair in Streptococcus PyogenesR15AI072718 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MCSHAN, WILLIAM MICHAEL · 2007 to 2013
$1.0M
NIAID NIH HHS R15 AI072718
6 · The paper itself

Abstract

Streptococcus anginosus is a member of the normal oral flora that can become a pathogen causing pyogenic infections in humans. The genome of daptomycin-resistant strain J4206, originally isolated from a patient suffering from breakthrough bacteremia and septic shock at the University of Texas Health Science Center at San Antonio, was determined. The circular genome is 2,001,352 bp long with a GC content of 38.62% and contains multiple mobile genetic elements, including the phage-like chromosomal island SanCI that mediates a mutator phenotype, transposons, and integrative conjugative elements. Daptomycin resistance involves multiple alterations in the cell membrane and cell wall, and unique features were identified in J4206 that may contribute to resistance. A cluster of capsular polysaccharide (CPS) genes for choline metabolism and transport are present that may help neutralize cell surface charges, destabilizing daptomycin binding. Further, unique J4206 genes encoding sortases and LPXTG-target proteins that are involved in cell wall modification were present. The J4206 genome is phylogenetically closely related to the recently reported vancomycin-resistant SA1 strain; however, these genomes differ with SNPs in cardiolipin synthetase, histidine kinase yycG, teichoic acid modification genes, and other genes involved in cell surface modification. Transmission electron microscopy showed that the cell walls of both strains J4206 and SA1 were significantly thicker and more electron dense than daptomycin- and vancomycin-sensitive strain J4211. This comparative genomic study has identified unique genes as well as allelic variants in the J4206 genome that are involved in cell surface modification and thus might contribute to the acquisition of daptomycin resistance.

Indexed as

Genome, BacterialAnti-Bacterial AgentsBacteremiaBase CompositionCell WallCholineDaptomycinDNA Transposable ElementsDrug Resistance, BacterialEndopeptidasesHumansMaleMembrane ProteinsMiddle AgedStreptococcus anginosusVancomycinAnti-Bacterial AgentsCholineDaptomycinDNA Transposable ElementsEndopeptidasesLPXTGase, Streptococcus group AMembrane ProteinsVancomycincell surface modificationdaptomycin resistancegenome analysismobile genetic elementsStreptococcus anginosus

Identifiers

PMID27678123
PMCPMC5203781
OpenAlexW2526818579

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.