Evidence map›Paper›PMID 27677986›Full record

ArticlePlant physiology2016

Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation.

Kuen-Jin Tsai, Chih-Yu Lin, Chen-Yun Ting, Ming-Che Shih

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Plant Life with and without Oxygen: A Metabolomics Approach.International journal of molecular sciences · 2023
    Review
  7. Article
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  10. Salt Stress Tolerance inPlants (Basel, Switzerland) · 2022
    Article
  11. The Role of Phytohormones in Plant Response to Flooding.International journal of molecular sciences · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Cloning and Bioinformatics Analysis ofFrontiers in plant science · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kuen-Jin TsaiInstitute of Plant Biology, National Taiwan University, Taipei 115, Taiwan (K.-J.T., M.-C.S.); and.ORCID 0000-0002-8928-4331
Chih-Yu LinInstitute of Plant Biology, National Taiwan University, Taipei 115, Taiwan (K.-J.T., M.-C.S.); and.ORCID 0000-0002-3601-9032
Chen-Yun TingInstitute of Plant Biology, National Taiwan University, Taipei 115, Taiwan (K.-J.T., M.-C.S.); and.ORCID 0000-0002-5421-3402
Ming-Che ShihInstitute of Plant Biology, National Taiwan University, Taipei 115, Taiwan (K.-J.T., M.-C.S.); and mcshih@gate.sinica.edu.tw.ORCID 0000-0002-7590-793X
National Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ethylene is an essential hormone in plants that is involved in low-oxygen and reoxygenation responses. As a key transcription factor in ethylene signaling, ETHYLENE INSENSITIVE3 (EIN3) activates targets that trigger various responses. However, most of these targets are still poorly characterized. Through analyses of our microarray data and the published Arabidopsis (Arabidopsis thaliana) EIN3 chromatin immunoprecipitation sequencing data set, we inferred the putative targets of EIN3 during anoxia-reoxygenation. Among them, GDH2, which encodes one subunit of glutamate dehydrogenase (GDH), was chosen for further studies for its role in tricarboxylic acid cycle replenishment. We demonstrated that both GDH1 and GDH2 are induced during anoxia and reoxygenation and that this induction is mediated via ethylene signaling. In addition, the results of enzymatic assays showed that the level of GDH during anoxia-reoxygenation decreased in the ethylene-insensitive mutants ein2-5 and ein3eil1 Global metabolite analysis indicated that the deamination activity of GDH might regenerate 2-oxoglutarate, which is a cosubstrate that facilitates the breakdown of alanine by alanine aminotransferase when reoxygenation occurs. Moreover, ineffective tricarboxylic acid cycle replenishment, disturbed carbohydrate metabolism, reduced phytosterol biosynthesis, and delayed energy regeneration were found in gdh1gdh2 and ethylene mutants during reoxygenation. Taken together, these data illustrate the essential role of EIN3-regulated GDH activity in metabolic adjustment during anoxia-reoxygenation.

Indexed as

AnaerobiosisArabidopsisArabidopsis ProteinsCarbohydrate MetabolismDNA-Binding ProteinsEnergy MetabolismEthylenesGene Expression Regulation, PlantGlutamate DehydrogenaseMetabolomeModels, BiologicalNuclear ProteinsOxygenPhenotypePhytosterolsProtein StabilityArabidopsis ProteinsDNA-Binding ProteinsEIN3 protein, ArabidopsisethyleneEthylenesGDH1 protein, ArabidopsisGDH2 protein, ArabidopsisGlutamate DehydrogenaseNuclear ProteinsOxygenPhytosterolsTranscription Factors

Identifiers

PMID27677986
PMCPMC5100772
OpenAlexW2525516066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.