Evidence map›Paper›PMID 27677881›Full record

ArticleThe Plant cell2016

Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase.

Manaki Mimura, Rémi Zallot, Thomas D Niehaus, Ghulam Hasnain, Satinder K Gidda, Thuy N D Nguyen, Erin M Anderson, Robert T Mullen, Greg Brown, Alexander F Yakunin and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Roles of type II HFrontiers in plant science · 2023
    Article
  6. B vitamin supply in plants and humans: the importance of vitamer homeostasis.The Plant journal : for cell and molecular biology · 2022
    Review
  7. Article
  8. Natural Variation in Vitamin BFrontiers in plant science · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. TheFrontiers in plant science · 2021
    Article
  15. The importance of thiamine (vitamin BThe Journal of biological chemistry · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Frontiers in plant science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Manaki MimuraHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611.ORCID 0000-0002-1263-6343
Rémi ZallotMicrobiology and Cell Science Department, University of Florida, Gainesville, Florida 32611.ORCID 0000-0002-7317-1578
Thomas D NiehausHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611.
Ghulam HasnainHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611.
Satinder K GiddaDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Thuy N D NguyenDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Erin M AndersonDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Robert T MullenDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.ORCID 0000-0002-6915-7407
Greg BrownDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario M5S 3E5, Canada.
Alexander F YakuninDepartment of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario M5S 3E5, Canada.
Valérie de Crécy-LagardMicrobiology and Cell Science Department, University of Florida, Gainesville, Florida 32611.
Jesse F GregoryFood Science and Human Nutrition Department, University of Florida, Gainesville, Florida 32611.
Donald R McCartyHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611 adha@ufl.edu drm@ufl.edu.ORCID 0000-0001-8694-5117
Andrew D HansonHorticultural Sciences Department, University of Florida, Gainesville, Florida 32611 adha@ufl.edu drm@ufl.edu.ORCID 0000-0003-2585-9340
University of Florida · USUniversity of Guelph · CAUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To synthesize the cofactor thiamin diphosphate (ThDP), plants must first hydrolyze thiamin monophosphate (ThMP) to thiamin, but dedicated enzymes for this hydrolysis step were unknown and widely doubted to exist. The classical thiamin-requiring th2-1 mutation in Arabidopsis thaliana was shown to reduce ThDP levels by half and to increase ThMP levels 5-fold, implying that the THIAMIN REQUIRING2 (TH2) gene product could be a dedicated ThMP phosphatase. Genomic and transcriptomic data indicated that TH2 corresponds to At5g32470, encoding a HAD (haloacid dehalogenase) family phosphatase fused to a TenA (thiamin salvage) family protein. Like the th2-1 mutant, an insertional mutant of At5g32470 accumulated ThMP, and the thiamin requirement of the th2-1 mutant was complemented by wild-type At5g32470 Complementation tests in Escherichia coli and enzyme assays with recombinant proteins confirmed that At5g32470 and its maize (Zea mays) orthologs GRMZM2G148896 and GRMZM2G078283 are ThMP-selective phosphatases whose activity resides in the HAD domain and that the At5g32470 TenA domain has the expected thiamin salvage activity. In vitro and in vivo experiments showed that alternative translation start sites direct the At5g32470 protein to the cytosol and potentially also to mitochondria. Our findings establish that plants have a dedicated ThMP phosphatase and indicate that modest (50%) ThDP depletion can produce severe deficiency symptoms.

Indexed as

ArabidopsisArabidopsis ProteinsEscherichia coliPhosphoric Monoester HydrolasesThiamine PyrophosphateArabidopsis ProteinsPhosphoric Monoester HydrolasesThiamine Pyrophosphate

Identifiers

PMID27677881
PMCPMC5134987
OpenAlexW2525528632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.