ArticleApplications in plant sciences2016
The complete chloroplast genome sequences for four Amaranthus species (Amaranthaceae).
Article in Applications in plant sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 72 citations in OpenAlex.
- Article
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- Comprehensive Chloroplast Genomic Insights intoPlants (Basel, Switzerland) · 2025Article
- Analysis of codon usage patterns in complete plastomes of four medicinalFrontiers in genetics · 2024Article
- The complete plastome ofMitochondrial DNA. Part B, Resources · 2024Article
- Comparative analysis of dioecious Amaranthus plastomes and phylogenomic implications within Amaranthaceae s.s.BMC ecology and evolution · 2023Article
- Genomic profiling of dioecious Amaranthus species provides novel insights into species relatedness and sex genes.BMC biology · 2023Article
- Genetic resources and breeding approaches for improvement of amaranth (Frontiers in nutrition · 2023Review
- Article
- Genetic variation and structure of complete chloroplast genome in alien monoecious and dioecious Amaranthus weeds.Scientific reports · 2022Article
- Comparative Analysis of Codon Bias in the Chloroplast Genomes of Theaceae Species.Frontiers in genetics · 2022Article
- Comparative and phylogenetic analyses of the chloroplast genomes of species of Paeoniaceae.Scientific reports · 2021Article
- Identification and phylogenetic analysis of five Crataegus species (Rosaceae) based on complete chloroplast genomes.Planta · 2021Article
- Comparative chloroplast genomes and phylogenetic analysis ofApplications in plant sciences · 2021Article
- Comparative Analysis of the Complete Chloroplast Genomes inBioMed research international · 2020Article
- Adaptation Evolution and Phylogenetic Analyses of Species in ChineseBioMed research international · 2020Article
- Methods of analysis of chloroplast genomes of CPlant methods · 2020Article
- Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing.PloS one · 2020Article
- Complete chloroplast genome sequences of four Allium species: comparative and phylogenetic analyses.Scientific reports · 2019Article
- Mitochondrial and chloroplast genomes provide insights into the evolutionary origins of quinoa (Chenopodium quinoa Willd.).Scientific reports · 2019Article
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5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premise of the studyThe amaranth genus contains many important grain and weedy species. We further our understanding of the genus through the development of a complete reference chloroplast genome. METHODS AND
resultsA high-quality Amaranthus hypochondriacus (Amaranthaceae) chloroplast genome assembly was developed using long-read technology. This reference genome was used to reconstruct the chloroplast genomes for two closely related grain species (A. cruentus and A. caudatus) and their putative progenitor (A. hybridus). The reference genome was 150,518 bp and possesses a circular structure of two inverted repeats (24,352 bp) separated by small (17,941 bp) and large (83,873 bp) single-copy regions; it encodes 111 genes, 72 for proteins. Relative to the reference chloroplast genome, an average of 210 single-nucleotide polymorphisms (SNPs) and 122 insertion/deletion polymorphisms (indels) were identified across the analyzed genomes.
conclusionsThis reference chloroplast genome, along with the reported simple sequence repeats, SNPs, and indels, is an invaluable genetic resource for studying the phylogeny and genetic diversity within the amaranth genus.
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