Evidence map›Paper›PMID 27672154›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2016

Convergent evolution of pathogenicity islands in helper cos phage interference.

Nuria Carpena, Keith A Manning, Terje Dokland, Alberto Marina, José R Penadés

Open access · hybridAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Capsid redirection mechanism of thePhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. AeLife · 2024
    Article
  6. AbioRxiv : the preprint server for biology · 2023
    Article
  7. Article
  8. Mobilization of vitamin BCell reports · 2021
    Article
  9. Review
  10. Article
  11. Bacteriophage Technology and Modern Medicine.Antibiotics (Basel, Switzerland) · 2021
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Nuria CarpenaInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK Departamento de Ciencias Biomédicas, Facultad de Ciencias de la Salud, Universidad CEU Cardenal Herrera, 46113 Moncada, Valencia, Spain.ORCID 0000-0002-1017-4499
Keith A ManningDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Terje DoklandDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Alberto MarinaInstituto de Biomedicina de Valencia (IBV-CSIC) and CIBER de Enfermedades Raras (CIBERER), 46010 Valencia, Spain.
José R PenadésInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK joser.penades@glasgow.ac.uk.ORCID 0000-0002-6439-5262
University of Alabama at Birmingham · USCentre for Biomedical Network Research on Rare Diseases · ESUniversidad Cardenal Herrera CEU · ESUniversity of Glasgow · GB

Funding

Structural basis for pathogenicity island mobilization in S. aureusR01AI083255 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2009 to 2023
$5.6M
Biotechnology and Biological Sciences Research Council BB/N002873/1Medical Research Council MR/M003876/1NIAID NIH HHS R01 AI083255
6 · The paper itself

Abstract

Staphylococcus aureus pathogenicity islands (SaPIs) are phage satellites that exploit the life cycle of their helper phages for their own benefit. Most SaPIs are packaged by their helper phages using a headful (pac) packaging mechanism. These SaPIs interfere with pac phage reproduction through a variety of strategies, including the redirection of phage capsid assembly to form small capsids, a process that depends on the expression of the SaPI-encoded cpmA and cpmB genes. Another SaPI subfamily is induced and packaged by cos-type phages, and although these cos SaPIs also block the life cycle of their inducing phages, the basis for this mechanism of interference remains to be deciphered. Here we have identified and characterized one mechanism by which the SaPIs interfere with cos phage reproduction. This mechanism depends on a SaPI-encoded gene, ccm, which encodes a protein involved in the production of small isometric capsids, compared with the prolate helper phage capsids. As the Ccm and CpmAB proteins are completely unrelated in sequence, this strategy represents a fascinating example of convergent evolution. Moreover, this result also indicates that the production of SaPI-sized particles is a widespread strategy of phage interference conserved during SaPI evolution.This article is part of the themed issue 'The new bacteriology'.

Indexed as

Evolution, MolecularBiological EvolutionCapsid ProteinsGenomic IslandsStaphylococcus aureusStaphylococcus PhagesVirus AssemblyCapsid Proteinsbacteriophage packagingbacteriophage resistancecapsid morphogenesisPICIsSaPIssmall capsids

Identifiers

PMID27672154
PMCPMC5052747
OpenAlexW2526845535

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.