Evidence map›Paper›PMID 27670816›Full record

ArticlePlant physiology2016

Evolutionary and Functional Analysis of Membrane-Bound NAC Transcription Factor Genes in Soybean.

Shuo Li, Nan Wang, Dandan Ji, Zheyong Xue, Yanchong Yu, Yupei Jiang, Jinglin Liu, Zhenhua Liu, Fengning Xiang

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification of the NTL Gene Family inPlants (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Review
  6. Genome-wide identification of the NAC family inFrontiers in plant science · 2024
    Article
  7. Article
  8. Identifying the Soybean microRNAs Related toInternational journal of molecular sciences · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Frontiers in plant science · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Shuo LiKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).ORCID 0000-0002-7285-8407
Nan WangKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).
Dandan JiKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).ORCID 0000-0002-8209-4578
Zheyong XueKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).
Yanchong YuKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).
Yupei JiangKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).ORCID 0000-0003-3075-0278
Jinglin LiuKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).
Zhenhua LiuKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.).
Fengning XiangKey Laboratory of the Plant Cell Engineering and Germplasm Innovation, School of Life Sciences, Shandong University, Jinan 250100, Shandong, China (S.L., N.W., D.J., Y.Y., Y.J., J.L., Z.L., F.X.); xfn0990@sdu.edu.cn.
Qilu University of Technology · CNShandong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional divergence is thought to be an important evolutionary driving force for the retention of duplicate genes. We reconstructed the evolutionary history of soybean (Glycine max) membrane-bound NAC transcription factor (NTL) genes. NTLs are thought to be components of stress signaling and unique in their requirement for proteolytic cleavage to free them from the membrane. Most of the 15 GmNTL genes appear to have evolved under strong purifying selection. By analyzing the phylogenetic tree and gene synteny, we identified seven duplicate gene pairs generated by the latest whole-genome duplication. The members of each pair were shown to have variously diverged at the transcriptional (organ specificity and responsiveness to stress), posttranscriptional (alternative splicing), and protein (proteolysis-mediated membrane release and transactivation activity) levels. The dormant (full-length protein) and active (protein without a transmembrane motif) forms of one pair of duplicated gene products (GmNTL1/GmNLT11) were each separately constitutively expressed in Arabidopsis (Arabidopsis thaliana). The heteroexpression of active but not dormant forms of these proteins caused improved tolerance to abiotic stresses, suggesting that membrane release was required for their functionality. Arabidopsis carrying the dormant form of GmNTL1 was more tolerant to hydrogen peroxide, which induces its membrane release. Tolerance was not increased in the line carrying dormant GmNTL11, which was not released by hydrogen peroxide treatment. Thus, NTL-release pattern changes may cause phenotypic divergence. It was concluded that a variety of functional divergences contributed to the retention of these GmNTL duplicates.

Indexed as

Evolution, MolecularGenes, PlantAlternative SplicingArabidopsisBase SequenceCell MembraneConserved SequenceEndoplasmic ReticulumExonsGene Expression ProfilingGene Expression Regulation, PlantGenes, DuplicateGlycine maxIntronsLikelihood FunctionsModels, BiologicalPlant ProteinsTranscription Factors

Identifiers

PMID27670816
PMCPMC5100753
OpenAlexW2525923179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.