Evidence map›Paper›PMID 27670607›Full record

ArticleJournal of the American Chemical Society2016

Mechanistic and Evolutionary Insights from Comparative Enzymology of Phosphomonoesterases and Phosphodiesterases across the Alkaline Phosphatase Superfamily.

Fanny Sunden, Ishraq AlSadhan, Artem Y Lyubimov, Susanne Ressl, Helen Wiersma-Koch, Jamar Borland, Clayton L Brown, Tory A Johnson, Zorawar Singh, Daniel Herschlag

Abstract readComparative Study
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Widespread promiscuous alkaline phosphatases underscore ancient microbial phosphite utilization.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  5. Green Biocatalysis of Xylitol Monoferulate:Biotech (Basel (Switzerland)) · 2025
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  6. LPS-DephosphorylatingMicroorganisms · 2024
    Article
  7. Article
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  11. High throughput and quantitative enzymology in the genomic era.Current opinion in structural biology · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Evolutionary repurposing of a sulfatase: A new Michaelis complex leads to efficient transition state charge offset.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fanny SundenDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Ishraq AlSadhanDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Artem Y LyubimovDepartments of Molecular and Cellular Physiology, Neurology and Neurological Science, Structural Biology, and Photon Science, Howard Hughes Medical Institute, Stanford University , Stanford, California 94305, United States.
Susanne ResslMolecular and Cellular Biochemistry Department, Indiana University , Bloomington, Indiana 47405, United States.
Helen Wiersma-KochDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Jamar BorlandDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Clayton L BrownDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Tory A JohnsonDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Zorawar SinghDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.
Daniel HerschlagDepartment of Biochemistry, Beckman Center, Stanford University , Stanford, California 94305, United States.

Funding

Enzymology of a Catalytic RNA MoleculeR37GM049243 · NIGMS · STANFORD UNIVERSITY · PI HERSCHLAG, DANIEL · 2002 to 2011
$4.2M
ENZYMOLOGY OF A CATALYTIC RNA MOLECULER01GM049243 · NIGMS · STANFORD UNIVERSITY · PI HERSCHLAG, DANIEL · 1993 to 2016
$2.3M
NIGMS NIH HHS R01 GM049243NIGMS NIH HHS R37 GM049243
6 · The paper itself

Abstract

Naively one might have expected an early division between phosphate monoesterases and diesterases of the alkaline phosphatase (AP) superfamily. On the contrary, prior results and our structural and biochemical analyses of phosphate monoesterase PafA, from Chryseobacterium meningosepticum, indicate similarities to a superfamily phosphate diesterase [Xanthomonas citri nucleotide pyrophosphatase/phosphodiesterase (NPP)] and distinct differences from the three metal ion AP superfamily monoesterase, from Escherichia coli AP (EcAP). We carried out a series of experiments to map out and learn from the differences and similarities between these enzymes. First, we asked why there would be independent instances of monoesterases in the AP superfamily? PafA has a much weaker product inhibition and slightly higher activity relative to EcAP, suggesting that different metabolic evolutionary pressures favored distinct active-site architectures. Next, we addressed the preferential phosphate monoester and diester catalysis of PafA and NPP, respectively. We asked whether the >80% sequence differences throughout these scaffolds provide functional specialization for each enzyme's cognate reaction. In contrast to expectations from this model, PafA and NPP mutants with the common subset of active-site groups embedded in each native scaffold had the same monoesterase:diesterase specificities; thus, the >10

Indexed as

Evolution, MolecularBiocatalysisCatalytic DomainChryseobacteriumHydrolysisModels, MolecularMutationPhosphoric Diester HydrolasesPhosphoric Monoester HydrolasesSubstrate SpecificityXanthomonasPhosphoric Diester HydrolasesPhosphoric Monoester Hydrolases

Identifiers

PMID27670607
PMCPMC5096464

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.