Evidence map›Paper›PMID 27669904›Full record

ArticleScientific reports2016

Identification and molecular characterization of bacteriophage phiAxp-2 of Achromobacter xylosoxidans.

Erna Li, Zhe Yin, Yanyan Ma, Huan Li, Weishi Lin, Xiao Wei, Ruixiang Zhao, Aimin Jiang, Jing Yuan, Xiangna Zhao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. CompoundingViruses · 2023
    Article
  6. Properties of Two Broad Host Range Phages ofInternational journal of molecular sciences · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Erna LiCollege of Food Science, South China Agricultural University, Guangzhou, 510642, China.
Zhe YinState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Yanyan MaCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, 453003, China.
Huan LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Weishi LinInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Xiao WeiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Ruixiang ZhaoCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, 453003, China.
Aimin JiangCollege of Food Science, South China Agricultural University, Guangzhou, 510642, China.
Jing YuanInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Xiangna ZhaoInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Academy of Military Medical Sciences · CNHenan Institute of Science and Technology · CNSouth China Agricultural University · CNInstitute of Microbiology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel Achromobacter xylosoxidans bacteriophage, phiAxp-2, was isolated from hospital sewage in China. The phage was morphologically and microbiologically characterized, and its one-step growth curve, host range, genomic sequence, and receptor were determined. Its morphology showed that phiAxp-2 belongs to the family Siphoviridae. Microbiological characterization demonstrated that pH 7 is most suitable for phage phiAxp-2; its titer decreased when the temperature exceeded 50 °C; phiAxp-2 is sensitive to ethanol and isopropanol; and the presence of calcium and magnesium ions is necessary to accelerate cell lysis and improve the formation of phiAxp-2 plaques. Genomic sequencing and a bioinformatic analysis showed that phage phiAxp-2 is a novel bacteriophage, consisting of a circular, double-stranded 62,220-bp DNA molecule with a GC content of 60.11% that encodes 86 putative open reading frames (ORFs). The lipopolysaccharide of A. xylosoxidans is involved in the adsorption of phiAxp-2.

Identifiers

PMID27669904
PMCPMC5037462
OpenAlexW2527086107

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.