ArticlePloS one
Development and Characterization of Genic SSR Markers from Indian Mulberry Transcriptome and Their Transferability to Related Species of Moraceae.
Article in PloS one. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- De Novo Transcriptome Assembly of Rice Bean (Plants (Basel, Switzerland) · 2024Article
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- Occurrence of simple sequence repeats in cDNA sequences of safflower (Frontiers in plant science · 2022Article
- Genic microsatellite marker characterization and development in little millet (Panicum sumatrense) using transcriptome sequencing.Scientific reports · 2021Article
- Development, characterization, functional annotation and validation of genomic and genic-SSR markers using de novo next generation sequencing in3 Biotech · 2021Article
- MusatransSSRDB (a transcriptome derived SSR database) - An advanced tool for banana improvement.Journal of biosciences · 2019Article
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- A new set of mulberry-specific SSR markers for application in cultivar identification and DUS testing.Journal of genetics · 2018Article
- Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources.Scientific reports · 2018Article
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- Introgression of Physiological Traits for a Comprehensive Improvement of Drought Adaptation in Crop Plants.Frontiers in chemistry · 2018Review
- Mulberry (Morus spp.) has the features to treat as a potential perennial model system.Plant signaling & behavior · 2018Review
- Improvement of abiotic stress adaptive traits in mulberry (Morus spp.): an update on biotechnological interventions.3 Biotech · 2017Review
- Transcriptome sequencing and metabolome analysis to reveal renewal evidence for drought adaptation in mulberry.IET systems biologyArticle
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Improving mulberry leaf production with enhanced leaf quality holds the key to sustain the ever increasing demand for silk. Adoption of modern genomic approaches for crop improvement is severely constrained by the lack of sufficient molecular markers in mulberry. Here, we report development and validation of 206 EST derived SSR markers using transcriptome data generated from leaf tissue of a drought tolerant mulberry genotype, Dudia white. Analysis of transcriptome data containing 10169 EST sequences, revealed 1469 sequences with microsatellite repeat motifs. We designed a total of 264 primers to the most appropriate repeat regions, of which 206 were locus specific. These markers were validated with 25 diverse mulberry accessions and their transferability to closely related species belonging to family Moraceae was examined. Of these markers, 189 revealed polymorphism with up to 8 allelic forms across mulberry species, genotypes and varieties with a mean of 3.5 alleles per locus. The markers also revealed higher polymorphic information content of 0.824 among the accessions. These markers effectively segregated the species and genotypes and hence, can be used for both diversity analysis and in breeding applications. Around 40% of these markers were transferable to other closely related species. Along with the other genic and genomic markers, we report a set of over 750 co-dominant markers. Using these markers we constructed the first genetic linkage map of mulberry exclusively with co-dominant markers.
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