Evidence map›Paper›PMID 27668319›Full record

ArticleCancer biology & therapy2016

MiR-339 and especially miR-766 reactivate the expression of tumor suppressor genes in colorectal cancer cell lines through DNA methyltransferase 3B gene inhibition.

Ali Afgar, Pezhman Fard-Esfahani, Amirhosein Mehrtash, Kayhan Azadmanesh, Farnaz Khodarahmi, Mahdis Ghadir, Ladan Teimoori-Toolabi

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In one paragraph

Article in Cancer biology & therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 54 citations in OpenAlex.

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  11. Predicting the possible effect of miR-203a-3p and miR-29a-3p onJournal of integrative bioinformatics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ali Afgara Molecular Medicine Department , Pasteur Institute of Iran , Tehran , Iran.
Pezhman Fard-Esfahanib Department of Biochemistry , Pasteur Institute of Iran , Tehran , Iran.
Amirhosein Mehrtasha Molecular Medicine Department , Pasteur Institute of Iran , Tehran , Iran.
Kayhan Azadmaneshc Virology Department , Pasteur Institute of Iran , Tehran , Iran.
Farnaz Khodarahmia Molecular Medicine Department , Pasteur Institute of Iran , Tehran , Iran.
Mahdis Ghadira Molecular Medicine Department , Pasteur Institute of Iran , Tehran , Iran.
Ladan Teimoori-Toolabia Molecular Medicine Department , Pasteur Institute of Iran , Tehran , Iran.
Pasteur Institute of Iran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is observed that upregulation of DNMT3B enzyme in some cancers, including colon cancer, could lead to silencing of tumor suppressor genes. MiR-339 and miR-766 have been predicted to target 3'UTR of DNMT3B gene. Luciferase reporter assay validated that individual and co-transfection of miR-766 and miR-339 into the HEK293T cell reduced luciferase activity to 26% ± 0.41%, 43% ± 0.42 and 64% ± 0.52%, respectively, compared to the control (P < 0.05). Furthermore, transduction of miR-339 and miR-766 expressing viruses into colon cancer cell lines (SW480 and HCT116) decreased DNMT3B expression (1.5, 3-fold) and (3, 4-fold), respectively. In addition, DNA methylation of some tumor suppressor genes decreased. Expression of these genes such as SFRP1 (2 and 1.6-fold), SFRP2 (0.07 and 4-fold), WIF1 (0.05 and 4-fold), and DKK2 (2 and 4-fold) increased in SW-339 and SW-766 cell lines; besides, expression increments for these genes in HCT-339 and HCT-766 cell lines were (2.8, 4-fold), (0.005, 1.5-fold), (1.7 and 3-fold) and (0.04, 1.7-fold), respectively. Also, while in SW-766, cell proliferation reduced to 2.8% and 21.7% after 24 and 48 hours, respectively, SW-339 showed no reduced proliferation. Meanwhile, HCT-766 and HCT-339 showed (3.5%, 12.8%) and (18.8%, 33.9%) reduced proliferation after 24 and 48 hours, respectively. Finally, targeting DNMT3B by these miRs, decreased methylation of tumor suppressor genes such as SFRP1, SFRP2, WIF1 and DKK2 in the mentioned cell lines, and returned the expression of these tumor suppressor genes which can contribute to lethal effect on colon cancer cells and reducing tumorigenicity of these cells.

Indexed as

Gene Expression Regulation, NeoplasticAdaptor Proteins, Signal TransducingCell Line, TumorCell ProliferationColorectal NeoplasmsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BGenes, Tumor SuppressorHCT116 CellsHEK293 CellsHumansHuman Umbilical Vein Endothelial CellsIntercellular Signaling Peptides and ProteinsMembrane ProteinsMicroRNAsRepressor ProteinsAdaptor Proteins, Signal TransducingDKK2 protein, humanDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BIntercellular Signaling Peptides and ProteinsMembrane ProteinsMicroRNAsMIRN339 microRNA, humanMIRN766 microRNA, humanRepressor ProteinsSecreted Frizzled-Related ProteinsSFRP1 protein, humanSFRP2 protein, humanWIF1 protein, humanColorectal neoplasmsDNA methyltransferase 3BgenesmethylationmicroRNAstumor suppressor

Identifiers

PMID27668319
PMCPMC5137492
OpenAlexW2525702246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.