Evidence map›Paper›PMID 27665464›Full record

ArticleJournal of molecular modeling2016

In silico structural characterization of protein targets for drug development against Trypanosoma cruzi.

Carlyle Ribeiro Lima, Nicolas Carels, Ana Carolina Ramos Guimaraes, Pierre Tufféry, Philippe Derreumaux

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Carlyle Ribeiro LimaMolécules Thérapeutiques in silico, Université Paris Diderot, INSERM UMR-S 973, Sorbonne Paris Cité, 75013, Paris, France.
Nicolas CarelsLaboratório de Modelagem de Sistemas Biológicos, National Institute for Science and Technology on Innovation in Neglected Diseases (INCT-IDN), Centro de Desenvolvimento Tecnológico em Saúde (CDTS), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, RJ, Brazil.
Ana Carolina Ramos GuimaraesLaboratório de Genômica Funcional e Bioinformática, Instituto Oswaldo Cruz (IOC), FIOCRUZ, Rio de Janeiro, Brazil.
Pierre TufféryMolécules Thérapeutiques in silico, Université Paris Diderot, INSERM UMR-S 973, Sorbonne Paris Cité, 75013, Paris, France. pierre.tuffery@univ-paris-diderot.fr.
Philippe DerreumauxLaboratoire de Biochimie Théorique, CNRS UPR 9080, Institut de Biologie Physico - Chimique, Université Paris Diderot, Sorbonne Paris Cité, 75005, Paris, France. philippe.derreumaux@ibpc.fr.
Fundação Oswaldo Cruz · BRUniversité Paris Cité · FRSorbonne Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trypanosoma cruzi is the protozoan pathogen responsible for Chagas disease, which is a major public health problem in tropical and subtropical regions of developing countries and particularly in Brazil. Despite many studies, there is no efficient treatment against Chagas disease, and the search for new therapeutic targets specific to T. cruzi is critical for drug development. Here, we have revisited 41 protein sequences proposed by the analogous enzyme pipeline, and found that it is possible to provide structures for T. cruzi sequences with clear homologs or analogs in H. sapiens and likely associated with trypanothione reductase, cysteine synthase, and ATPase functions, and structures for sequences specific to T. cruzi and absent in H. sapiens associated with 2,4-dienoyl-CoA reductase, and leishmanolysin activities. The implications of our structures refined by atomistic molecular dynamics (monomer or dimer states) in their in vitro environments (aqueous solution or membrane bilayers) are discussed for drug development and suggest that all protein targets, except cysteine synthase, merit further investigation.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceChagas DiseaseComputer SimulationCysteine SynthaseDrug DiscoveryModels, MolecularNADH, NADPH OxidoreductasesOxidoreductases Acting on CH-CH Group DonorsProtozoan ProteinsTrypanosoma cruzi2,4-dienoyl-CoA reductaseAdenosine TriphosphatasesCysteine SynthaseNADH, NADPH OxidoreductasesOxidoreductases Acting on CH-CH Group DonorsProtozoan Proteinstrypanothione reductaseDrugsMolecular dynamicsProtein targetsStructuresT. Cruzi

Identifiers

PMID27665464
OpenAlexW2523257257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.