Evidence map›Paper›PMID 27664238›Full record

ArticleGenes & development2016

Cap-independent translation by DAP5 controls cell fate decisions in human embryonic stem cells.

Yael Yoffe, Maya David, Rinat Kalaora, Lital Povodovski, Gilgi Friedlander, Ester Feldmesser, Elena Ainbinder, Ann Saada, Shani Bialik, Adi Kimchi

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 59 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yael YoffeDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Maya DavidDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Rinat KalaoraDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Lital PovodovskiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Gilgi FriedlanderNancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot 76100, Israel;
Ester FeldmesserBioinformatics Unit, Weizmann Institute of Science, Rehovot 76100, Israel;
Elena AinbinderStem Cell Core Unit, Weizmann Institute of Science, Rehovot 76100, Israel;
Ann SaadaMonique and Jacques Roboh Department of Genetic Research, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel; Department of Genetics and Metabolic Diseases, Hadassah-Hebrew University Medical Center, Jerusalem 91120, Israel.
Shani BialikDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Adi KimchiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel;
Weizmann Institute of Science · ILHadassah Medical Center · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple transcriptional and epigenetic changes drive differentiation of embryonic stem cells (ESCs). This study unveils an additional level of gene expression regulation involving noncanonical, cap-independent translation of a select group of mRNAs. This is driven by death-associated protein 5 (DAP5/eIF4G2/NAT1), a translation initiation factor mediating IRES-dependent translation. We found that the DAP5 knockdown from human ESCs (hESCs) resulted in persistence of pluripotent gene expression, delayed induction of differentiation-associated genes in different cell lineages, and defective embryoid body formation. The latter involved improper cellular organization, lack of cavitation, and enhanced mislocalized apoptosis. RNA sequencing of polysome-associated mRNAs identified candidates with reduced translation efficiency in DAP5-depleted hESCs. These were enriched in mitochondrial proteins involved in oxidative respiration, a pathway essential for differentiation, the significance of which was confirmed by the aberrant mitochondrial morphology and decreased oxidative respiratory activity in DAP5 knockdown cells. Further analysis identified the chromatin modifier HMGN3 as a cap-independent DAP5 translation target whose knockdown resulted in defective differentiation. Thus, DAP5-mediated translation of a specific set of proteins is critical for the transition from pluripotency to differentiation, highlighting the importance of cap-independent translation in stem cell fate decisions.

Indexed as

ApoptosisCell DifferentiationEmbryoid BodiesEukaryotic Initiation Factor-4GGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHMGN ProteinsHuman Embryonic Stem CellsHumansPluripotent Stem CellsEIF4G2 protein, humanEukaryotic Initiation Factor-4GHMGN3 protein, humanHMGN Proteinscap-independent translationDAP5human embryonic stem cellsprotein translation controlstem cell differentiation

Identifiers

PMID27664238
PMCPMC5066241
OpenAlexW2444226862

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.