Evidence map›Paper›PMID 27662900›Full record

ArticleGenome research2016

Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently.

Sophia David, Christophe Rusniok, Massimo Mentasti, Laura Gomez-Valero, Simon R Harris, Pierre Lechat, John Lees, Christophe Ginevra, Philippe Glaser, Laurence Ma and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Guideline
  2. Microorganisms · 2026
    Review
  3. Pathogens (Basel, Switzerland) · 2026
    Article
  4. Genomic characterization ofPathogens and global health · 2026
    Article
  5. Molecular evolution and adaptations ofFrontiers in cellular and infection microbiology · 2026
    Review
  6. The discovery of aScience advances · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Genomic analysis ofMicrobial genomics · 2025
    Article
  11. Article
  12. Journal of bacteriology · 2024
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Severe Legionnaires' disease.Annals of intensive care · 2024
    Review
  19. High performanceApplied and environmental microbiology · 2024
    Article
  20. Characterization of a Novel Species ofPathogens (Basel, Switzerland) · 2024
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Sophia DavidWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA Cambridge, United Kingdom.
Christophe RusniokInstitut Pasteur, Biologie des Bactéries Intracellulaires, 75015, Paris, France.
Massimo MentastiPublic Health England, NW9 5HT London, United Kingdom.
Laura Gomez-ValeroInstitut Pasteur, Biologie des Bactéries Intracellulaires, 75015, Paris, France.
Simon R HarrisWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA Cambridge, United Kingdom.
Pierre LechatHub de Bio-informatique et Biostatistiques, Centre de Bio-informatique, Biostatistique et Biologie Intégrative (C3BI), Institut Pasteur, 75724, Paris, France.
John LeesWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA Cambridge, United Kingdom.
Christophe GinevraNational Reference Centre for Legionella, Hospice Civil de Lyon, International Center for Infection Research, Legionella pathogenesis Team, 69364, Lyon, France.
Philippe GlaserCNRS UMR 3525, 75724, Paris, France.
Laurence MaInstitut Pasteur, Plate-Forme Génomique, 75724, Paris, France.
Christiane BouchierInstitut Pasteur, Plate-Forme Génomique, 75724, Paris, France.
Anthony UnderwoodPublic Health England, NW9 5HT London, United Kingdom.
Sophie JarraudNational Reference Centre for Legionella, Hospice Civil de Lyon, International Center for Infection Research, Legionella pathogenesis Team, 69364, Lyon, France.
Timothy G HarrisonPublic Health England, NW9 5HT London, United Kingdom.
Julian ParkhillWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA Cambridge, United Kingdom.
Carmen BuchrieserInstitut Pasteur, Biologie des Bactéries Intracellulaires, 75015, Paris, France.
Centre National de la Recherche Scientifique · FRWellcome Sanger Institute · GBInstitut Pasteur · FRPublic Health England · GBCentre International de Recherche en Infectiologie · FR

Funding

Wellcome Trust 098051
6 · The paper itself

Abstract

Legionella pneumophila is an environmental bacterium and the leading cause of Legionnaires' disease. Just five sequence types (ST), from more than 2000 currently described, cause nearly half of disease cases in northwest Europe. Here, we report the sequence and analyses of 364 L. pneumophila genomes, including 337 from the five disease-associated STs and 27 representative of the species diversity. Phylogenetic analyses revealed that the five STs have independent origins within a highly diverse species. The number of de novo mutations is extremely low with maximum pairwise single-nucleotide polymorphisms (SNPs) ranging from 19 (ST47) to 127 (ST1), which suggests emergences within the last century. Isolates sampled geographically far apart differ by only a few SNPs, demonstrating rapid dissemination. These five STs have been recombining recently, leading to a shared pool of allelic variants potentially contributing to their increased disease propensity. The oldest clone, ST1, has spread globally; between 1940 and 2000, four new clones have emerged in Europe, which show long-distance, rapid dispersal. That a large proportion of clinical cases is caused by recently emerged and internationally dispersed clones, linked by convergent evolution, is surprising for an environmental bacterium traditionally considered to be an opportunistic pathogen. To simultaneously explain recent emergence, rapid spread and increased disease association, we hypothesize that these STs have adapted to new man-made environmental niches, which may be linked by human infection and transmission.

Indexed as

Evolution, MolecularHumansLegionella pneumophilaLegionnaires' DiseaseMutationPhylogenyPolymorphism, Single NucleotideSelection, GeneticVirulence

Identifiers

PMID27662900
PMCPMC5088597
OpenAlexW2521135598

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.