Evidence map›Paper›PMID 27662087›Full record

ArticleCell2016

Structural Basis for Gating and Activation of RyR1.

Amédée des Georges, Oliver B Clarke, Ran Zalk, Qi Yuan, Kendall J Condon, Robert A Grassucci, Wayne A Hendrickson, Andrew R Marks, Joachim Frank

Abstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 234 papers.

0numbers the graph read from it
0cells of the map it votes in
234citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

234 citing papers in PubMed.

  1. Trial
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  5. Review
  6. In-frame exon skipping induced by the c.14510delA variant inEuropean journal of translational myology · 2026
    Article
  7. Article
  8. Article
  9. Article
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  11. Review
  12. Article
  13. Review
  14. Cylindrical Crystallization of CaInternational journal of molecular sciences · 2026
    Review
  15. Review
  16. Article
  17. Characterization of cardiac disease-associated mutations in RyR2 CaAmerican journal of physiology. Cell physiology · 2026
    Article
  18. Review
  19. Review
  20. The Clinical, Histological, and Genetic Spectrum ofJournal of clinical medicine · 2026
    Article

174 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Amédée des GeorgesDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA.
Oliver B ClarkeDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Ran ZalkDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA.
Qi YuanDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA.
Kendall J CondonDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA.
Robert A GrassucciDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA.
Wayne A HendricksonDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Department of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address: wayne@xtl.cumc.columbia.edu.
Andrew R MarksDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA; Department of Medicine, Columbia University, New York, NY 10032, USA; Wu Center for Molecular Cardiology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA. Electronic address: arm42@cumc.columbia.edu.
Joachim FrankDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Howard Hughes Medical Institute, Columbia University, New York, NY 10032, USA; Department of Biological Sciences, Columbia University, New York, NY 10032, USA. Electronic address: jf2192@cumc.columbia.edu.

Funding

Structural Genomics on Membrane ProteinsU54GM095315 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI ROST, BURKHARD · 2010 to 2014
$15.2M
Training (303-338)P41GM116799 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI HENDRICKSON, WAYNE A. · 2016 to 2020
$7.1M
MOLECULAR BASIS OF HEART FAILURER01HL061503 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT · 1998 to 2016
$6.5M
STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
Intracellular calcium leak and muscle functionR01AR060037 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT · 2010 to 2014
$1.7M
American Heart Association-American Stroke Association 0625919THHMINHLBI NIH HHS R01 HL061503NIAMS NIH HHS R01 AR060037NIGMS NIH HHS P41 GM116799NIGMS NIH HHS R01 GM029169NIGMS NIH HHS U54 GM095315
6 · The paper itself

Abstract

The type-1 ryanodine receptor (RyR1) is an intracellular calcium (Ca(2+)) release channel required for skeletal muscle contraction. Here, we present cryo-EM reconstructions of RyR1 in multiple functional states revealing the structural basis of channel gating and ligand-dependent activation. Binding sites for the channel activators Ca(2+), ATP, and caffeine were identified at interdomain interfaces of the C-terminal domain. Either ATP or Ca(2+) alone induces conformational changes in the cytoplasmic assembly ("priming"), without pore dilation. In contrast, in the presence of all three activating ligands, high-resolution reconstructions of open and closed states of RyR1 were obtained from the same sample, enabling analyses of conformational changes associated with gating. Gating involves global conformational changes in the cytosolic assembly accompanied by local changes in the transmembrane domain, which include bending of the S6 transmembrane segment and consequent pore dilation, displacement, and deformation of the S4-S5 linker and conformational changes in the pseudo-voltage-sensor domain.

Indexed as

Ion Channel GatingMuscle ContractionAnimalsBinding SitesCaffeineCalciumCalcium Channel AgonistsCryoelectron MicroscopyLigandsProtein DomainsRabbitsRyanodine Receptor Calcium Release ChannelTacrolimus Binding ProteinsCaffeineCalciumCalcium Channel AgonistsLigandsRyanodine Receptor Calcium Release ChannelTacrolimus Binding Proteinscalcium releasecryo-EMexcitation contraction couplinggatingryanodineRyRsingle-particle reconstructionstructure

Identifiers

PMID27662087
PMCPMC5142848

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.