Evidence map›Paper›PMID 27660797›Full record

ArticleGenome announcements2016

Complete Genome Sequence of the Intracellular Bacterial Symbiont TC1 in the Anaerobic Ciliate Trimyema compressum.

Naoya Shinzato, Hiroaki Aoyama, Seikoh Saitoh, Naruo Nikoh, Kazuma Nakano, Makiko Shimoji, Misuzu Shinzato, Kazuhito Satou, Kuniko Teruya, Takashi Hirano and 8 more

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Complete Genome Sequence of "Microbiology resource announcements · 2022
    Article
  3. Article
  4. Review
  5. Symbiosis Studies in Microbial Ecology.Microbes and environments · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Naoya ShinzatoTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan naoya-s@comb.u-ryukyu.ac.jp.
Hiroaki AoyamaTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan Center for Strategic Research Project, University of the Ryukyus, Nishihara, Okinawa, Japan.
Seikoh SaitohTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan.
Naruo NikohDepartment of Liberal Arts, The Open University of Japan, Chiba, Chiba, Japan.
Kazuma NakanoOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.ORCID http://orcid.org/0000-0001-9908-6526
Makiko ShimojiOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.
Misuzu ShinzatoOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.
Kazuhito SatouOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.ORCID http://orcid.org/0000-0003-4230-7644
Kuniko TeruyaOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.
Takashi HiranoOkinawa Institute of Advanced Sciences, Uruma, Okinawa, Japan.
Takanori YamadaTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan.
Masaru K NobuBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Hideyuki TamakiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.
Yumi ShiraiTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan.
Sanghwa ParkTropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan.
Takashi NarihiroBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.
Wen-Tso LiuDepartment of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Yoichi KamagataBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.
Okinawa Institute of Science and Technology Graduate University · JPUniversity of the Ryukyus · JPNational Institute of Advanced Industrial Science and Technology · JPUniversity of Illinois Urbana-Champaign · USThe Open University of Japan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A free-living ciliate, Trimyema compressum, found in anoxic freshwater environments harbors methanogenic archaea and a bacterial symbiont named TC1 in its cytoplasm. Here, we report the complete genome sequence of the TC1 symbiont, consisting of a 1.59-Mb chromosome and a 35.8-kb plasmid, which was determined using the PacBio RSII sequencer.

Identifiers

PMID27660797
PMCPMC5034148
OpenAlexW2521790550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.