Evidence map›Paper›PMID 27660625›Full record

ArticleFrontiers in microbiology2016

Bacteriophage T4 Infection of Stationary Phase E. coli: Life after Log from a Phage Perspective.

Daniel Bryan, Ayman El-Shibiny, Zack Hobbs, Jillian Porter, Elizabeth M Kutter

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed.

  1. Review
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  12. Review
  13. Article
  14. Article
  15. Quantifying phage infectivity from characteristics of bacterial population dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Survival and spread of engineeredApplied and environmental microbiology · 2025
    Article
  17. Isolation and Characterization ofFoods (Basel, Switzerland) · 2025
    Article
  18. Article
  19. Review
  20. Review

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel BryanKutter Bacteriophage Lab, The Evergreen State College Olympia, WA, USA.
Ayman El-ShibinyKutter Bacteriophage Lab, The Evergreen State CollegeOlympia, WA, USA; Biomedical Sciences, University of Science and Technology, Zewail City of Science and TechnologyGiza, Egypt; Faculty of Environmental Agricultural Sciences, Arish UniversityArish, Egypt.
Zack HobbsKutter Bacteriophage Lab, The Evergreen State College Olympia, WA, USA.
Jillian PorterKutter Bacteriophage Lab, The Evergreen State College Olympia, WA, USA.
Elizabeth M KutterKutter Bacteriophage Lab, The Evergreen State College Olympia, WA, USA.

Funding

T-Even Phages for Food-Chain Biocontrol of e.coli 0157R15GM063637 · NIGMS · EVERGREEN STATE COLLEGE · PI BRABBAN, ANDREW DAVID, KUTTER, ELIZABETH MARTIN · 2001 to 2009
$526k
NIGMS NIH HHS R15 GM063637
6 · The paper itself

Abstract

Virtually all studies of phage infections investigate bacteria growing exponentially in rich media. In nature, however, phages largely encounter non-growing cells. Bacteria entering stationary phase often activate well-studied stress defense mechanisms that drastically alter the cell, facilitating its long-term survival. An understanding of phage-host interactions in such conditions is of major importance from both an ecological and therapeutic standpoint. Here, we show that bacteriophage T4 can efficiently bind to, infect and kill E. coli in stationary phase, both in the presence and absence of a functional stationary-phase sigma factor, and explore the response of T4-infected stationary phase cells to the addition of fresh nutrients 5 or 24 h after that infection. An unexpected new mode of response has been identified. "Hibernation" mode is a persistent but reversible dormant state in which the infected cells make at least some phage enzymes, but halt phage development until appropriate nutrients become available before producing phage particles. Our evidence indicates that the block in hibernation mode occurs after the middle-mode stage of phage development; host DNA breakdown and the incorporation of the released nucleotides into phage DNA indicate that the enzymes of the nucleotide synthesizing complex, under middle-mode control, have been made and assembled into a functional state. Once fresh glucose and amino acids become available, the standard lytic infection process rapidly resumes and concentrations of up to 10(11) progeny phage (an average of about 40 phage per initially present cell) are produced. All evidence is consistent with the hibernation-mode control point lying between middle mode and late mode T4 gene expression. We have also observed a "scavenger" response, where the infecting phage takes advantage of whatever few nutrients are available to produce small quantities of progeny within 2 to 5 h after infection. The scavenger response seems able to produce no more than an average of one phage per originally available cell, and few if any further progeny are produced by cells in this mode even if fresh nutrients are made available later.

Indexed as

bacteriophage T4E. colihibernation modemultiplicity of infection (MOI)scavenger responsesigma Sstationary phaseT4 nucleotide synthesizing complex

Identifiers

PMID27660625
PMCPMC5014867

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.