Evidence map›Paper›PMID 27660383›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2016

Random Walk Based Segmentation for the Prostate on 3D Transrectal Ultrasound Images.

Ling Ma, Rongrong Guo, Zhiqiang Tian, Rajesh Venkataraman, Saradwata Sarkar, Xiabi Liu, Peter T Nieh, Viraj V Master, David M Schuster, Baowei Fei

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ling MaDepartment of Radiology and Imaging Sciences, Emory University, Atlanta, GA; School of Computer Science, Beijing Institute of Technology, Beijing.
Rongrong GuoDepartment of Radiology and Imaging Sciences, Emory University, Atlanta, GA.
Zhiqiang TianDepartment of Radiology and Imaging Sciences, Emory University, Atlanta, GA.
Rajesh VenkataramanDepartment of R&D, Eigen, Grass Valley, CA.
Saradwata SarkarDepartment of R&D, Eigen, Grass Valley, CA.
Xiabi LiuSchool of Computer Science, Beijing Institute of Technology, Beijing.
Peter T NiehDepartment of Urology, Emory University School of Medicine, Atlanta, GA.
Viraj V MasterDepartment of Urology, Emory University School of Medicine, Atlanta, GA.
David M SchusterDepartment of Radiology and Imaging Sciences, Emory University, Atlanta, GA.
Baowei FeiDepartment of Radiology and Imaging Sciences, Emory University, Atlanta, GA; Winship Cancer Institute of Emory University, Atlanta, GA; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA.

Funding

MOLECULAR IMAGING DIRECTED, 3D ULTRASOUND-GUIDED, BIOPSY SYSTEMR01CA156775 · NCI · UNIVERSITY OF TEXAS DALLAS · PI FEI, BAOWEI · 2011 to 2016
$1.7M
Targeted fusion biopsy using anti-[18F]FACBC PET/CT and real-time 3D ultrasound gR21CA176684 · NCI · EMORY UNIVERSITY · PI FEI, BAOWEI, MASTER, VIRAJ · 2013 to 2014
$568k
Multimodality in vivo Molecular Imaging for Prostate PDTR21CA120536 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI FEI, BAOWEI · 2006 to 2007
$326k
NCI NIH HHS R01 CA156775NCI NIH HHS R21 CA120536NCI NIH HHS R21 CA176684
6 · The paper itself

Abstract

This paper proposes a new semi-automatic segmentation method for the prostate on 3D transrectal ultrasound images (TRUS) by combining the region and classification information. We use a random walk algorithm to express the region information efficiently and flexibly because it can avoid segmentation leakage and shrinking bias. We further use the decision tree as the classifier to distinguish the prostate from the non-prostate tissue because of its fast speed and superior performance, especially for a binary classification problem. Our segmentation algorithm is initialized with the user roughly marking the prostate and non-prostate points on the mid-gland slice which are fitted into an ellipse for obtaining more points. Based on these fitted seed points, we run the random walk algorithm to segment the prostate on the mid-gland slice. The segmented contour and the information from the decision tree classification are combined to determine the initial seed points for the other slices. The random walk algorithm is then used to segment the prostate on the adjacent slice. We propagate the process until all slices are segmented. The segmentation method was tested in 32 3D transrectal ultrasound images. Manual segmentation by a radiologist serves as the gold standard for the validation. The experimental results show that the proposed method achieved a Dice similarity coefficient of 91.37±0.05%. The segmentation method can be applied to 3D ultrasound-guided prostate biopsy and other applications.

Indexed as

3D transrectal ultrasound image (TRUS)decision treeprostate segmentationrandom walksemi-automatic segmentation

Identifiers

PMID27660383
PMCPMC5029423

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.