Evidence map›Paper›PMID 27659302›Full record

ArticleNature communications2016

A bead-based western for high-throughput cellular signal transduction analyses.

Fridolin Treindl, Benjamin Ruprecht, Yvonne Beiter, Silke Schultz, Anette Döttinger, Annette Staebler, Thomas O Joos, Simon Kling, Oliver Poetz, Tanja Fehm and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
16.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 131 citations in OpenAlex.

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  14. Functionally-instructed modifiers of response to ATR inhibition in experimental glioma.Journal of experimental & clinical cancer research : CR · 2024
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  16. iScience · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Fridolin TreindlNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Benjamin RuprechtChair for Proteomics and Bioanalytics, Center of Life and Food Sciences Weihenstephan, Technische Universität München, 85354 Freising, Germany.
Yvonne BeiterNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Silke SchultzDepartment of Obstetrics and Gynecology, Medical Faculty and University Hospital of the Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany.
Anette DöttingerNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Annette StaeblerDepartment of Pathology, University Hospital Tübingen, 72076 Tübingen, Germany.
Thomas O JoosNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Simon KlingNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Oliver PoetzNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Tanja FehmDepartment of Obstetrics and Gynecology, Medical Faculty and University Hospital of the Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany.
Hans NeubauerDepartment of Obstetrics and Gynecology, Medical Faculty and University Hospital of the Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany.
Bernhard KusterChair for Proteomics and Bioanalytics, Center of Life and Food Sciences Weihenstephan, Technische Universität München, 85354 Freising, Germany.ORCID http://orcid.org/0000-0002-9094-1677
Markus F TemplinNMI Natural and Medical Sciences Institute at the University of Tübingen, 72770 Reutlingen, Germany.
Natural and Medical Sciences Institute · DEDüsseldorf University Hospital · DECenter for Integrated Protein Science Munich · DEUniversity Children's Hospital Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dissecting cellular signalling requires the analysis of large number of proteins. The DigiWest approach we describe here transfers the western blot to a bead-based microarray platform. By combining gel-based protein separation with immobilization on microspheres, hundreds of replicas of the initial blot are created, thus enabling the comprehensive analysis of limited material, such as cells collected by laser capture microdissection, and extending traditional western blotting to reach proteomic scales. The combination of molecular weight resolution, sensitivity and signal linearity on an automated platform enables the rapid quantification of hundreds of specific proteins and protein modifications in complex samples. This high-throughput western blot approach allowed us to identify and characterize alterations in cellular signal transduction that occur during the development of resistance to the kinase inhibitor Lapatinib, revealing major changes in the activation state of Ephrin-mediated signalling and a central role for p53-controlled processes.

Identifiers

PMID27659302
PMCPMC5036152
OpenAlexW2521489366

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.