Evidence map›Paper›PMID 27659211›Full record

ArticleGenome biology2016

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Alexie Papanicolaou, Marc F Schetelig, Peter Arensburger, Peter W Atkinson, Joshua B Benoit, Kostas Bourtzis, Pedro Castañera, John P Cavanaugh, Hsu Chao, Christopher Childers and 55 more

Erratum issuedAbstract read
In one paragraph

Article in Genome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Genomic investigations of successful invasions: the picture emerging from recent studies.Biological reviews of the Cambridge Philosophical Society · 2025
    Pooled it
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  9. Decoding and engineering temperature-sensitive lethality inProceedings of the National Academy of Sciences of the United States of America · 2025
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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

65 authors.

Alexie PapanicolaouHawkesbury Institute for the Environment, Western Sydney University, Sydney, Australia.
Marc F ScheteligJustus-Liebig-University Giessen, Institute for Insect Biotechnology, 35394, Giessen, Germany.
Peter ArensburgerDepartment of Biological Sciences, Cal Poly Pomona, Pomona, CA, 91768, USA.
Peter W AtkinsonDepartment of Entomology and Center for Disease Vector Research, University of California Riverside, Riverside, CA, 92521, USA.
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Kostas BourtzisInsect Pest Control Laboratory, Joint FAO/IAEA Programme of Nuclear Techniques in Food and Agriculture, Seibersdorf, Vienna, Austria.
Pedro CastañeraDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
John P CavanaughDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Hsu ChaoHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Christopher ChildersNational Agricultural Library, USDA, Beltsville, MD, 20705, USA.
Ingrid CurrilGeorg-August-Universität Göttingen, Johann-Friedrich-Blumenbach-Institut für Zoologie und Anthropologie, 37077, Göttingen, Germany.
Huyen DinhHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
HarshaVardhan DoddapaneniHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Amanda DolanDepartment of Biology, University of Rochester, Rochester, NY, 14627, USA.
Shannon DuganHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Markus FriedrichDepartment of Biological Sciences, Wayne State University, Detroit, MI, 48202, USA.
Giuliano GasperiDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Scott GeibUSDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI, 96720, USA.
Georgios GeorgakilasDIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece and Hellenic Pasteur Institute, 11521, Athens, Greece.
Richard A GibbsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Sarah D GiersDepartment of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Ludvik M GomulskiDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Miguel González-GuzmánDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
Ana Guillem-AmatDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
Yi HanHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Artemis G HatzigeorgiouDIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece and Hellenic Pasteur Institute, 11521, Athens, Greece.
Pedro Hernández-CrespoDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
Daniel S T HughesHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Jeffery W JonesDepartment of Biological Sciences, Oakland University, Rochester, MI, 48309, USA.
Dimitra KaragkouniDIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece and Hellenic Pasteur Institute, 11521, Athens, Greece.
Panagiota KoskiniotiDepartment of Biochemistry and Biotechnology, University of Thessaly, Larissa, Greece.
Sandra L LeeHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Anna R MalacridaDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Mosè ManniDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Kostas MathiopoulosDepartment of Biochemistry and Biotechnology, University of Thessaly, Larissa, Greece.
Angela MeccarielloDepartment of Biology, University of Naples Federico II, 80126, Naples, Italy.
Monica Munoz-Torres
Shwetha C MuraliHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Terence D MurphyNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20892, USA.
Donna M MuznyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Georg OberhoferGeorg-August-Universität Göttingen, Johann-Friedrich-Blumenbach-Institut für Zoologie und Anthropologie, 37077, Göttingen, Germany.
Félix OrtegoDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
Maria D ParaskevopoulouDIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece and Hellenic Pasteur Institute, 11521, Athens, Greece.
Monica PoelchauNational Agricultural Library, USDA, Beltsville, MD, 20705, USA.
Jiaxin QuHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Martin ReczkoInstitute of Molecular Biology and Genetics, Biomedical Sciences Research Centre "Alexander Fleming", Vari, Greece.
Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Andrew J RosendaleDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Andrew E RosselotDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, 45221, USA.
Giuseppe SacconeDepartment of Biology, University of Naples Federico II, 80126, Naples, Italy.
Marco SalveminiDepartment of Biology, University of Naples Federico II, 80126, Naples, Italy.
Grazia SaviniDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Patrick SchreinerInterdepartmental Graduate Program in Genetics, Genomics & Bioinformatics, University of California Riverside, Riverside, CA, 92521, USA.
Francesca ScolariDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Paolo SicilianoDepartment of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy.
Sheina B SimUSDA-ARS, Pacific Basin Agricultural Research Center, Hilo, HI, 96720, USA.
George TsiamisDepartment of Environmental and Natural Resources Management, University of Patras, Agrinio, Greece.
Enric UreñaDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, 28040, Madrid, Spain.
Ioannis S VlachosDIANA-Lab, Department of Electrical & Computer Engineering, University of Thessaly, 382 21 Volos, Greece and Hellenic Pasteur Institute, 11521, Athens, Greece.
John H WerrenDepartment of Biology, University of Rochester, Rochester, NY, 14627, USA.
Ernst A WimmerGeorg-August-Universität Göttingen, Johann-Friedrich-Blumenbach-Institut für Zoologie und Anthropologie, 37077, Göttingen, Germany.
Kim C WorleyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Antigone ZacharopoulouDepartment of Biology, University of Patras, Patras, Greece.
Stephen RichardsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Alfred M HandlerUSDA-ARS, Center for Medical, Agricultural, and Veterinary Entomology, 1700 S.W. 23rd Drive, Gainesville, FL, 32608, USA. al.handler@ars.usda.gov.

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
NHGRI NIH HHS U54 HG003273
6 · The paper itself

Abstract

backgroundThe Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control.

resultsThe 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT.

conclusionsThe medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.

Indexed as

Biological EvolutionGenome, InsectMolecular Sequence AnnotationAnimalsAnimals, Genetically ModifiedCeratitis capitataHigh-Throughput Nucleotide SequencingHumansIntroduced SpeciesPest Control, BiologicalChromosomal syntenyGene family evolutionInsect adaptationInsect invasivenessInsect orthologyMedfly genomeMedfly integrated pest management (IPM)Tephritid genomics

Identifiers

PMID27659211
PMCPMC5034548

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