Evidence map›Paper›PMID 27659070›Full record

ArticleScientific reports2016

Characterization and Comparative Genomic Analyses of Pseudomonas aeruginosa Phage PaoP5: New Members Assigned to PAK_P1-like Viruses.

Mengyu Shen, Shuai Le, Xiaolin Jin, Gang Li, Yinling Tan, Ming Li, Xia Zhao, Wei Shen, Yuhui Yang, Jing Wang and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Inhaled Bacteriophage Therapy for Multi-Drug ResistantThe Yale journal of biology and medicine · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genomic and Proteomic Characterizations ofFrontiers in microbiology · 2019
    Article
  15. Review
  16. Article
  17. Article
  18. Characterization and Genomic Analyses ofFrontiers in microbiology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Mengyu ShenDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Shuai LeDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Xiaolin JinDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Gang LiDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Yinling TanDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Ming LiDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Xia ZhaoDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Wei ShenDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Yuhui YangDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Jing WangDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Hongbin ZhuDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Shu LiDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Xiancai RaoDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Fuquan HuDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.
Shuguang LuDepartment of Microbiology, College of Basic Medical Science, Third Military Medical University, Chongqing, 400038, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As a potential alternative to antibiotics, phages can be used to treat multi-drug resistant bacteria. As such, the biological characteristics of phages should be investigated to utilize them as effective antimicrobial agents. In this study, phage PaoP5, a lytic virus that infects Pseudomonas aeruginosa PAO1, was isolated and genomically characterized. PaoP5 comprises an icosahedral head with an apex diameter of 69 nm and a contractile tail with a length of 120 nm. The PaoP5 genome is a linear dsDNA molecule containing 93,464 base pairs (bp) with 49.51% G + C content of 11 tRNA genes and a 1,200 bp terminal redundancy. A total of 176 protein-coding genes were predicted in the PaoP5 genome. Nine PaoP5 structural proteins were identified. Three hypothetical proteins were determined as structural. Comparative genomic analyses revealed that seven new Pseudomonas phages, namely, PaoP5, K8, C11, vB_PaeM_C2-10_Ab02, vB_PaeM_C2-10_Ab08, vB_PaeM_C2-10_Ab10, and vB_PaeM_C2-10_Ab15, were similar to PAK_P1-like viruses. Phylogenetic and pan-genome analyses suggested that the new phages should be assigned to PAK_P1-like viruses, which possess approximately 100 core genes and 150 accessory genes. This work presents a detailed and comparative analysis of PaoP5 to enhance our understanding of phage biology.

Identifiers

PMID27659070
PMCPMC5034324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.